Literature DB >> 25427668

Genome-wide association studies in Africans and African Americans: expanding the framework of the genomics of human traits and disease.

Emmanuel Peprah, Huichun Xu, Fasil Tekola-Ayele, Charmaine D Royal.   

Abstract

Genomic research is one of the tools for elucidating the pathogenesis of diseases of global health relevance and paving the research dimension to clinical and public health translation. Recent advances in genomic research and technologies have increased our understanding of human diseases, genes associated with these disorders, and the relevant mechanisms. Genome-wide association studies (GWAS) have proliferated since the first studies were published several years ago and have become an important tool in helping researchers comprehend human variation and the role genetic variants play in disease. However, the need to expand the diversity of populations in GWAS has become increasingly apparent as new knowledge is gained about genetic variation. Inclusion of diverse populations in genomic studies is critical to a more complete understanding of human variation and elucidation of the underpinnings of complex diseases. In this review, we summarize the available data on GWAS in recent African ancestry populations within the western hemisphere (i.e. African Americans and peoples of the Caribbean) and continental African populations. Furthermore, we highlight ways in which genomic studies in populations of recent African ancestry have led to advances in the areas of malaria, HIV, prostate cancer, and other diseases. Finally, we discuss the advantages of conducting GWAS in recent African ancestry populations in the context of addressing existing and emerging global health conditions.

Entities:  

Mesh:

Year:  2014        PMID: 25427668      PMCID: PMC4418477          DOI: 10.1159/000367962

Source DB:  PubMed          Journal:  Public Health Genomics        ISSN: 1662-4246            Impact factor:   2.000


  268 in total

1.  Large-scale genome-wide association study of Asian population reveals genetic factors in FRMD4A and other loci influencing smoking initiation and nicotine dependence.

Authors:  Dankyu Yoon; Young-Jin Kim; Wen-Yan Cui; Andrew Van der Vaart; Yoon Shin Cho; Jong-Young Lee; Jennie Z Ma; Thomas J Payne; Ming D Li; Taesung Park
Journal:  Hum Genet       Date:  2011-10-18       Impact factor: 4.132

2.  A 2-stage genome-wide association study to identify single nucleotide polymorphisms associated with development of erectile dysfunction following radiation therapy for prostate cancer.

Authors:  Sarah L Kerns; Richard Stock; Nelson Stone; Michael Buckstein; Yongzhao Shao; Christopher Campbell; Lynda Rath; Dirk De Ruysscher; Guido Lammering; Rosetta Hixson; Jamie Cesaretti; Mitchell Terk; Harry Ostrer; Barry S Rosenstein
Journal:  Int J Radiat Oncol Biol Phys       Date:  2012-09-26       Impact factor: 7.038

3.  A conserved role for a GATA transcription factor in regulating epithelial innate immune responses.

Authors:  Michael Shapira; Brigham J Hamlin; Jiming Rong; Karen Chen; Michal Ronen; Man-Wah Tan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-09-12       Impact factor: 11.205

4.  Common human genetic variants and HIV-1 susceptibility: a genome-wide survey in a homogeneous African population.

Authors:  Slavé Petrovski; Jacques Fellay; Kevin V Shianna; Nicole Carpenetti; Johnstone Kumwenda; Gift Kamanga; Deborah D Kamwendo; Norman L Letvin; Andrew J McMichael; Barton F Haynes; Myron S Cohen; David B Goldstein
Journal:  AIDS       Date:  2011-02-20       Impact factor: 4.177

5.  Genome-wide association study identifies candidate genes for male fertility traits in humans.

Authors:  Gülüm Kosova; Nicole M Scott; Craig Niederberger; Gail S Prins; Carole Ober
Journal:  Am J Hum Genet       Date:  2012-05-24       Impact factor: 11.025

6.  A genome-wide association study identifies novel loci for paclitaxel-induced sensory peripheral neuropathy in CALGB 40101.

Authors:  R Michael Baldwin; Kouros Owzar; Hitoshi Zembutsu; Aparna Chhibber; Michiaki Kubo; Chen Jiang; Dorothy Watson; Rachel J Eclov; Joel Mefford; Howard L McLeod; Paula N Friedman; Clifford A Hudis; Eric P Winer; Eric M Jorgenson; John S Witte; Lawrence N Shulman; Yusuke Nakamura; Mark J Ratain; Deanna L Kroetz
Journal:  Clin Cancer Res       Date:  2012-07-27       Impact factor: 12.531

7.  Common variants on chromosome 6p22.1 are associated with schizophrenia.

Authors:  Jianxin Shi; Douglas F Levinson; Jubao Duan; Alan R Sanders; Yonglan Zheng; Itsik Pe'er; Frank Dudbridge; Peter A Holmans; Alice S Whittemore; Bryan J Mowry; Ann Olincy; Farooq Amin; C Robert Cloninger; Jeremy M Silverman; Nancy G Buccola; William F Byerley; Donald W Black; Raymond R Crowe; Jorge R Oksenberg; Daniel B Mirel; Kenneth S Kendler; Robert Freedman; Pablo V Gejman
Journal:  Nature       Date:  2009-07-01       Impact factor: 49.962

Review 8.  Generation and maintenance of memory CD4(+) T Cells.

Authors:  Ester M M van Leeuwen; Jonathan Sprent; Charles D Surh
Journal:  Curr Opin Immunol       Date:  2009-03-11       Impact factor: 7.486

Review 9.  Chromosome 8p as a potential hub for developmental neuropsychiatric disorders: implications for schizophrenia, autism and cancer.

Authors:  R Tabarés-Seisdedos; J L R Rubenstein
Journal:  Mol Psychiatry       Date:  2009-02-10       Impact factor: 15.992

10.  Genome-wide characterization of shared and distinct genetic components that influence blood lipid levels in ethnically diverse human populations.

Authors:  Marc A Coram; Qing Duan; Thomas J Hoffmann; Timothy Thornton; Joshua W Knowles; Nicholas A Johnson; Heather M Ochs-Balcom; Timothy A Donlon; Lisa W Martin; Charles B Eaton; Jennifer G Robinson; Neil J Risch; Xiaofeng Zhu; Charles Kooperberg; Yun Li; Alex P Reiner; Hua Tang
Journal:  Am J Hum Genet       Date:  2013-05-30       Impact factor: 11.025

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  31 in total

1.  Conference report: pharmacogenomics in special populations at WCP2018.

Authors:  Guilherme Suarez-Kurtz; Eleni Aklillu; Yoshiro Saito; Andrew A Somogyi
Journal:  Br J Clin Pharmacol       Date:  2019-01-24       Impact factor: 4.335

Review 2.  Alcohol Dependence Genetics: Lessons Learned From Genome-Wide Association Studies (GWAS) and Post-GWAS Analyses.

Authors:  Amy B Hart; Henry R Kranzler
Journal:  Alcohol Clin Exp Res       Date:  2015-06-25       Impact factor: 3.455

3.  Genome-Wide Association Studies for Idiosyncratic Drug-Induced Hepatotoxicity: Looking Back-Looking Forward to Next-Generation Innovation.

Authors:  Zelalem Petros; Eyasu Makonnen; Eleni Aklillu
Journal:  OMICS       Date:  2017-02-16

4.  Genome-Wide Association and Replication Study of Hepatotoxicity Induced by Antiretrovirals Alone or with Concomitant Anti-Tuberculosis Drugs.

Authors:  Zelalem Petros; Ming Ta Michael Lee; Atsushi Takahashi; Yanfei Zhang; Getnet Yimer; Abiy Habtewold; Ina Schuppe-Koistinen; Taisei Mushiroda; Eyasu Makonnen; Michiaki Kubo; Eleni Aklillu
Journal:  OMICS       Date:  2017-04

Review 5.  Examining How Our Shared Evolutionary History Shapes Future Disease Outcomes.

Authors:  Fasil Tekola-Ayele; Emmanuel Peprah
Journal:  Glob Heart       Date:  2017-03-13

6.  Gut Microbiome Alterations Associated with Diabetes in Mexican Americans in South Texas.

Authors:  Suet-Ying Kwan; Caroline M Sabotta; Aron Joon; Peng Wei; Lauren E Petty; Jennifer E Below; Xiaogang Wu; Jianhua Zhang; Robert R Jenq; Ernest T Hawk; Joseph B McCormick; Susan P Fisher-Hoch; Laura Beretta
Journal:  mSystems       Date:  2022-04-28       Impact factor: 7.324

7.  Gut microbiome features associated with liver fibrosis in Hispanics, a population at high risk for fatty liver disease.

Authors:  Suet-Ying Kwan; Jingjing Jiao; Aron Joon; Peng Wei; Lauren E Petty; Jennifer E Below; Carrie R Daniel; Xiaogang Wu; Jianhua Zhang; Robert R Jenq; P Andrew Futreal; Ernest T Hawk; Joseph B McCormick; Susan P Fisher-Hoch; Laura Beretta
Journal:  Hepatology       Date:  2021-12-13       Impact factor: 17.298

Review 8.  Sickle cell disease and H3Africa: enhancing genomic research on cardiovascular diseases in African patients.

Authors:  Ambroise Wonkam; Julie Makani; Solomon Ofori-Aquah; Obiageli E Nnodu; Marsha Treadwell; Charmaine Royal; Kwaku Ohene-Frempong
Journal:  Cardiovasc J Afr       Date:  2015 Mar-Apr       Impact factor: 0.802

Review 9.  Neurogenomics: An opportunity to integrate neuroscience, genomics and bioinformatics research in Africa.

Authors:  Thomas K Karikari; Jelena Aleksic
Journal:  Appl Transl Genom       Date:  2015-07-22

10.  Uganda Genome Resource Enables Insights into Population History and Genomic Discovery in Africa.

Authors:  Deepti Gurdasani; Tommy Carstensen; Segun Fatumo; Guanjie Chen; Chris S Franklin; Javier Prado-Martinez; Heleen Bouman; Federico Abascal; Marc Haber; Ioanna Tachmazidou; Iain Mathieson; Kenneth Ekoru; Marianne K DeGorter; Rebecca N Nsubuga; Chris Finan; Eleanor Wheeler; Li Chen; David N Cooper; Stephan Schiffels; Yuan Chen; Graham R S Ritchie; Martin O Pollard; Mary D Fortune; Alex J Mentzer; Erik Garrison; Anders Bergström; Konstantinos Hatzikotoulas; Adebowale Adeyemo; Ayo Doumatey; Heather Elding; Louise V Wain; Georg Ehret; Paul L Auer; Charles L Kooperberg; Alexander P Reiner; Nora Franceschini; Dermot Maher; Stephen B Montgomery; Carl Kadie; Chris Widmer; Yali Xue; Janet Seeley; Gershim Asiki; Anatoli Kamali; Elizabeth H Young; Cristina Pomilla; Nicole Soranzo; Eleftheria Zeggini; Fraser Pirie; Andrew P Morris; David Heckerman; Chris Tyler-Smith; Ayesha A Motala; Charles Rotimi; Pontiano Kaleebu; Inês Barroso; Manj S Sandhu
Journal:  Cell       Date:  2019-10-31       Impact factor: 41.582

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