| Literature DB >> 25426473 |
Abstract
Recent studies demonstrated that interleukin 1 receptor antagonist (IL-1RN) plays an important role in metabolic effects. To investigate whether IL1RN polymorphisms are associated with obesity, two single nucleotide polymorphisms (SNPs) of the IL1RN gene [rs4251961 (-828, T> C) and rs315952 (Ser133Ser)] were analyzed in 122 overweigh/obese and 123 control subjects. Overweigh/obese subjects were classified according to body mass index (BMI). SNPStats was used to obtain odds ratios (ORs), 95% confidence intervals (CIs), and P values. Multiple logistic regression models (codominant1, codominant2, dominant, recessive, and log-additive) were conducted to analyze the genetic data. Synonymous SNP (rs315952) of the IL1RN gene was associated with overweigh/obese with hypertension (OR= 4.98, 95% CI= 1.74-14.19, P = 0.003 in codominant 1 model and OR= 3.98, 95% CI= 1.48-10.74, P= 0.0029 in dominant model). However, another SNP (rs4151961) did not show association with overweigh/obese or overweigh/obese with hypertension. These results suggest that exonic SNP of IL1RN (rs 315952, Ser133Ser) may be contributed to overweigh/obese with hyper-tension.Entities:
Keywords: BMI; Hypertension; IL1RN; Overweigh/obese; Single nucleotide polymorphism
Year: 2014 PMID: 25426473 PMCID: PMC4237851 DOI: 10.12965/jer.140155
Source DB: PubMed Journal: J Exerc Rehabil ISSN: 2288-176X
Clinical characteristics in overweigh/obese and control subjects
| Overweigh/obese | Controls | |
|---|---|---|
| Total number (n) | 122 | 123 |
| Male/female (n) | 88/34 | 46/77 |
| Age (mean age±SD) | 43.5±14.2 | 35.4±11.3 |
| BMI (kg/m2) | 25.6±2.3 | 20.6±1.3 |
| Blood pressure (mmHg) | ||
| SBP | 130.9±15.8 | 115.8±14.4 |
| DBP | 80.4±10.3 | 70.6±9.6 |
SD, standard deviation; n, number of subjects; BMI, body mass index; SBP, systolic blood pressure; DBP, diastolic blood pressure.
Primer sequences for each SNP
| SNPs | Sense (5’-3’) | Anti-sense (5’-3’) |
|---|---|---|
| rs4251961 | CTGGTCTGCTCCTTCCTCTCTA | AGCTTCATGTCTCTGCATTCTG |
| rs315952 | TGGCATTTCCCCTGTACTAACT | TCCTCCTGGAAGTAGAATTTGG |
SNP, single nucleotide polymorphism.
Genotype and allele frequencies of IL1RN SNPs in overweigh/obese and control subjects
| SNP | Genotype | Controls | Overweigh/obese | Models | OR (95% CI) | Fisher’s exact | |
|---|---|---|---|---|---|---|---|
|
| |||||||
| n (%) | n (%) | ||||||
| rs4251961 | T/T | 102 (82.9) | 104 (85.2) | Codominant1 | 0.78 (0.36–1.67) | 0.52 | |
| -828 T> C | T/C | 20 (16.3) | 18 (14.8) | Codominant2 | 0.00 (0.00–NA) | NA | 0.50 |
| C/C | 1 (0.8) | 0 (0.0) | Dominant | 0.75 (0.35–1.61) | 0.46 | ||
| Recessive | 0.00 (0.00–NA) | NA | 1.00 | ||||
| Log-additive | 0.74 (0.35–1.55) | 0.42 | |||||
| T | 224 (91.1) | 226 (92.6) | 1 | ||||
| C | 22 (8.9) | 18 (7.4) | 0.81 (0.42–1.55) | 0.53 | |||
| rs315952 | C/C | 41 (33.3) | 39 (32.0) | Codominant1 | 1.29 (0.69–2.42) | 0.43 | |
| Ser133Ser | T/C | 65 (52.9) | 62 (50.8) | Codominant2 | 1.04 (0.44–2.44) | 0.93 | |
| T/T | 17 (13.8) | 21 (17.2) | Dominant | 1.22 (0.67–2.22) | 0.51 | ||
| Recessive | 0.89 (0.41–1.92) | 0.77 | |||||
| Log-additive | 1.07 (0.71–1.61) | 0.76 | |||||
| C | 147 (59.8) | 140 (57.4) | 1 | ||||
| T | 99 (40.2) | 104 (42.6) | 1.10 (0.77–1.58) | 0.59 | |||
SNP, singe nucleotide polymorphism; OR, odds ratio; CI, confidence interval; NA, not applicable. The P values were calculated from logistic regression analysis adjusting sex and age.
Haplotype analysis in IL1RN SNPs
| Haplotype | Frequency | Controls | Overweigh/obese | Chi Square | |||
|---|---|---|---|---|---|---|---|
|
|
| ||||||
| + | − | + | − | ||||
| TC | 0.57 | 143.1 | 102.9 | 135.8 | 108.2 | 0.32 | 0.57 |
| TT | 0.35 | 80.9 | 165.1 | 90.2 | 153.8 | 0.90 | 0.34 |
| CT | 0.07 | 18.1 | 227.9 | 13.8 | 230.2 | 0.59 | 0.44 |
| CC | 0.02 | 3.9 | 242.1 | 4.2 | 239.8 | 0.02 | 0.90 |
The haplotype consists of rs4251961 and rs315952.
Genotype and allele frequencies of IL1RN SNPs in overweigh/obese with non-hypertension and overweigh/obese with hypertension
| SNP | Genotype | Overweigh/obese with non-hypertension | Overweigh/obese with hypertension | Models | OR (95% CI) | |
|---|---|---|---|---|---|---|
|
|
| |||||
| n (%) | n (%) | |||||
| rs4251961 | T/T | 82 (83.7) | 34 (85.0 | Codominant1 | 0.80 (0.28–2.28) | 0.67 |
| -828 T> C | T/C | 16 (16.3) | 6 (15.0 | |||
| C/C | 0 (0.0) | 0 (0.0) | ||||
| T | 180 (91.8) | 74 (92.5) | 1 | |||
| C | 16 (8.2) | 6 (7.5) | 0.91 (0.34–2.42) | 0.85 | ||
| C/C | 36 (36.7) | 6 (15.0) | Codominant1 | 4.98 (1.74–14.19) | ||
| C/T | 45 (45.9) | 27 (67.5) | Codominant2 | 2.39 (0.68–8.36) | 0.17 | |
| rs315952 | T/T | 17 (17.4) | 7 (17.5) | Dominant | 3.98 (1.48–10.74) | |
| Ser133Ser | Recessive | 0.86 (0.32–2.31) | 0.76 | |||
| Log-additive | 1.60 (0.93–2.77) | 0.09 | ||||
| C | 117 (59.7) | 39 (48.7) | 1 | |||
| T | 79 (40.3) | 41 (51.3) | 1.56 (0.92–2.63) | 0.08 |
SNP, singe nucleotide polymorphism; OR, odds ratio; CI, confidence interval. The P values were calculated from logistic regression analysis adjusting sex and age.