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Literature DB >> 25419961

Acoustic force spectroscopy.

Gerrit Sitters¹, Douwe Kamsma¹, Gregor Thalhammer², Monika Ritsch-Marte², Erwin J G Peterman¹, Gijs J L Wuite¹.

Abstract

Force spectroscopy has become an indispensable tool to unravel the structural and mechanochemical properties of biomolecules. Here we extend the force spectroscopy toolbox with an acoustic manipulation device that can exert forces from subpiconewtons to hundreds of piconewtons on thousands of biomolecules in parallel, with submillisecond response time and inherent stability. This method can be readily integrated in lab-on-a-chip devices, allowing for cost-effective and massively parallel applications.

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Year: 2014 PMID： 25419961 DOI： 10.1038/nmeth.3183

Source DB: PubMed Journal: Nat Methods ISSN： 1548-7091 Impact factor: 28.547

25 in total

1. Forces acting on a small particle in an acoustical field in a viscous fluid.

Authors: Mikkel Settnes; Henrik Bruus
Journal: Phys Rev E Stat Nonlin Soft Matter Phys Date: 2012-01-30

2. Power spectrum analysis with least-squares fitting: amplitude bias and its elimination, with application to optical tweezers and atomic force microscope cantilevers.

Authors: Simon F Nørrelykke; Henrik Flyvbjerg
Journal: Rev Sci Instrum Date: 2010-07 Impact factor: 1.523

3. Massively parallel single-molecule manipulation using centrifugal force.

Authors: Ken Halvorsen; Wesley P Wong
Journal: Biophys J Date: 2010-06-02 Impact factor: 4.033

4. Modelling for the robust design of layered resonators for ultrasonic particle manipulation.

Authors: Martyn Hill; Rosemary J Townsend; Nicholas R Harris
Journal: Ultrasonics Date: 2008-06-17 Impact factor: 2.890

5. Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures.

Authors: Zhucheng Chen; Haijuan Yang; Nikola P Pavletich
Journal: Nature Date: 2008-05-22 Impact factor: 49.962

6. Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

Authors: S B Smith; Y Cui; C Bustamante
Journal: Science Date: 1996-02-09 Impact factor: 47.728

7. Lab-on-a-chip technologies for single-molecule studies.

Authors: Yanhui Zhao; Danqi Chen; Hongjun Yue; Jarrod B French; Joseph Rufo; Stephen J Benkovic; Tony Jun Huang
Journal: Lab Chip Date: 2013-05-14 Impact factor: 6.799

8. DNA curtains and nanoscale curtain rods: high-throughput tools for single molecule imaging.

Authors: Teresa Fazio; Mari-Liis Visnapuu; Shalom Wind; Eric C Greene
Journal: Langmuir Date: 2008-08-07 Impact factor: 3.882

9. Dynamics and Regulation of RecA Polymerization and De-Polymerization on Double-Stranded DNA.

Authors: Hongxia Fu; Shimin Le; Kalappa Muniyappa; Jie Yan
Journal: PLoS One Date: 2013-06-18 Impact factor: 3.240

10. Distinct contributions of MSL complex subunits to the transcriptional enhancement responsible for dosage compensation in Drosophila.

Authors: David Dunlap; Ruth Yokoyama; Huiping Ling; He-Ying Sun; Kerry McGill; Simona Cugusi; John C Lucchesi
Journal: Nucleic Acids Res Date: 2012-10-09 Impact factor: 16.971

56 in total

Acoustic force spectroscopy.

1. Forces acting on a small particle in an acoustical field in a viscous fluid.

2. Power spectrum analysis with least-squares fitting: amplitude bias and its elimination, with application to optical tweezers and atomic force microscope cantilevers.

3. Massively parallel single-molecule manipulation using centrifugal force.

4. Modelling for the robust design of layered resonators for ultrasonic particle manipulation.

5. Mechanism of homologous recombination from the RecA-ssDNA/dsDNA structures.

6. Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.

7. Lab-on-a-chip technologies for single-molecule studies.

8. DNA curtains and nanoscale curtain rods: high-throughput tools for single molecule imaging.

9. Dynamics and Regulation of RecA Polymerization and De-Polymerization on Double-Stranded DNA.

10. Distinct contributions of MSL complex subunits to the transcriptional enhancement responsible for dosage compensation in Drosophila.

1. Toward high-throughput biomechanical phenotyping of single molecules.

2. Quantifying Molecular Forces with Serially Connected Force Sensors.

3. Switching between Exonucleolysis and Replication by T7 DNA Polymerase Ensures High Fidelity.

4. Acoustic force measurements on polymer-coated microbubbles in a microfluidic device.

5. Single-Bond Association Kinetics Determined by Tethered Particle Motion: Concept and Simulations.

6. Multiplexed, Tethered Particle Microscopy for Studies of DNA-Enzyme Dynamics.

7. Repurposing a Benchtop Centrifuge for High-Throughput Single-Molecule Force Spectroscopy.

8. Model-free 3D localization with precision estimates for brightfield-imaged particles.

9. Acoustofluidic methods in cell analysis.

10. High-Throughput Universal DNA Curtain Arrays for Single-Molecule Fluorescence Imaging.