Literature DB >> 25419898

Slow internal protein dynamics in solution.

R Biehl, D Richter.   

Abstract

Large-scale domain dynamics in proteins are found when flexible linkers or hinges connect domains. The related conformational changes are often related to the function of the protein,for example by arranging the active center after substrate binding or allowing transport and release of products. The adaptation of a specific active structure is referred to as ‘induced fit’ and is challenged by models such as ‘conformational sampling’. Newer models about protein unction include some flexibility within the protein structure or even internal dynamics of the protein. As larger domains contribute to the configurational changes, the timescale of the involved motions is slowed down. The role of slow domain dynamics is being increasingly recognized as essential to understanding the function of proteins. Neutron spin echospectroscopy (NSE) is a technique that is able to access the related timescales from 0.1 up to several hundred nanoseconds and simultaneously covers the length scale relevant for protein domain movements of several nanometers distance between domains. Here we focus on these large-scale domain fluctuations and show how the structure and dynamics of proteins can be assessed by small-angle neutron scattering and NSE.

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Year:  2014        PMID: 25419898     DOI: 10.1088/0953-8984/26/50/503103

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  8 in total

1.  Nanoscale protein domain motion and long-range allostery in signaling proteins- a view from neutron spin echo sprectroscopy.

Authors:  David J E Callaway; Zimei Bu
Journal:  Biophys Rev       Date:  2015-06

Review 2.  Dynamic Protein Interaction Networks and New Structural Paradigms in Signaling.

Authors:  Veronika Csizmok; Ariele Viacava Follis; Richard W Kriwacki; Julie D Forman-Kay
Journal:  Chem Rev       Date:  2016-02-29       Impact factor: 60.622

3.  Structure and domain dynamics of human lactoferrin in solution and the influence of Fe(III)-ion ligand binding.

Authors:  Clemens Sill; Ralf Biehl; Bernd Hoffmann; Aurel Radulescu; Marie-Sousai Appavou; Bela Farago; Rudolf Merkel; Dieter Richter
Journal:  BMC Biophys       Date:  2016-11-04       Impact factor: 4.778

4.  Monomeric Amyloid Beta Peptide in Hexafluoroisopropanol Detected by Small Angle Neutron Scattering.

Authors:  Bo Zhang-Haagen; Ralf Biehl; Luitgard Nagel-Steger; Aurel Radulescu; Dieter Richter; Dieter Willbold
Journal:  PLoS One       Date:  2016-02-26       Impact factor: 3.240

5.  Intermediate scattering functions of a rigid body monoclonal antibody protein in solution studied by dissipative particle dynamic simulation.

Authors:  Yanqin Zhai; Nicos S Martys; William L George; Joseph E Curtis; Jannatun Nayem; Y Z; Yun Liu
Journal:  Struct Dyn       Date:  2021-04-08       Impact factor: 2.920

6.  Variation of Structural and Dynamical Flexibility of Myelin Basic Protein in Response to Guanidinium Chloride.

Authors:  Luman Haris; Ralf Biehl; Martin Dulle; Aurel Radulescu; Olaf Holderer; Ingo Hoffmann; Andreas M Stadler
Journal:  Int J Mol Sci       Date:  2022-06-23       Impact factor: 6.208

7.  Fast antibody fragment motion: flexible linkers act as entropic spring.

Authors:  Laura R Stingaciu; Oxana Ivanova; Michael Ohl; Ralf Biehl; Dieter Richter
Journal:  Sci Rep       Date:  2016-03-29       Impact factor: 4.379

8.  Revealing the Dynamics of Thylakoid Membranes in Living Cyanobacterial Cells.

Authors:  Laura-Roxana Stingaciu; Hugh O'Neill; Michelle Liberton; Volker S Urban; Himadri B Pakrasi; Michael Ohl
Journal:  Sci Rep       Date:  2016-01-21       Impact factor: 4.379

  8 in total

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