Literature DB >> 25419545

Accelerating Large Scale Image Analyses on Parallel, CPU-GPU Equipped Systems.

George Teodoro, Tahsin M Kurc, Tony Pan, Lee A D Cooper, Jun Kong, Patrick Widener, Joel H Saltz.   

Abstract

The past decade has witnessed a major paradigm shift in high performance computing with the introduction of accelerators as general purpose processors. These computing devices make available very high parallel computing power at low cost and power consumption, transforming current high performance platforms into heterogeneous CPU-GPU equipped systems. Although the theoretical performance achieved by these hybrid systems is impressive, taking practical advantage of this computing power remains a very challenging problem. Most applications are still deployed to either GPU or CPU, leaving the other resource under- or un-utilized. In this paper, we propose, implement, and evaluate a performance aware scheduling technique along with optimizations to make efficient collaborative use of CPUs and GPUs on a parallel system. In the context of feature computations in large scale image analysis applications, our evaluations show that intelligently co-scheduling CPUs and GPUs can significantly improve performance over GPU-only or multi-core CPU-only approaches.

Entities:  

Keywords:  CPU-GPU systems; Image analysis; In Silico; Microscopy

Year:  2012        PMID: 25419545      PMCID: PMC4240502          DOI: 10.1109/IPDPS.2012.101

Source DB:  PubMed          Journal:  IPDPS


  1 in total

1.  An integrative approach for in silico glioma research.

Authors:  Lee A D Cooper; Jun Kong; David A Gutman; Fusheng Wang; Sharath R Cholleti; Tony C Pan; Patrick M Widener; Ashish Sharma; Tom Mikkelsen; Adam E Flanders; Daniel L Rubin; Erwin G Van Meir; Tahsin M Kurc; Carlos S Moreno; Daniel J Brat; Joel H Saltz
Journal:  IEEE Trans Biomed Eng       Date:  2010-07-23       Impact factor: 4.538

  1 in total
  8 in total

1.  Feature-based Analysis of Large-scale Spatio-Temporal Sensor Data on Hybrid Architectures.

Authors:  Joel Saltz; George Teodoro; Tony Pan; Lee Cooper; Jun Kong; Scott Klasky; Tahsin Kurc
Journal:  Int J High Perform Comput Appl       Date:  2013-06-09       Impact factor: 1.942

2.  Region Templates: Data Representation and Management for High-Throughput Image Analysis.

Authors:  George Teodoro; Tony Pan; Tahsin Kurc; Jun Kong; Lee Cooper; Scott Klasky; Joel Saltz
Journal:  Parallel Comput       Date:  2014-12-01       Impact factor: 0.986

3.  Efficient Irregular Wavefront Propagation Algorithms on Hybrid CPU-GPU Machines.

Authors:  George Teodoro; Tony Pan; Tahsin Kurc; Jun Kong; Lee Cooper; Joel Saltz
Journal:  Parallel Comput       Date:  2013-04-01       Impact factor: 0.986

4.  Comparative Performance Analysis of Intel Xeon Phi, GPU, and CPU: A Case Study from Microscopy Image Analysis.

Authors:  George Teodoro; Tahsin Kurc; Jun Kong; Lee Cooper; Joel Saltz
Journal:  IEEE Trans Parallel Distrib Syst       Date:  2014-05       Impact factor: 2.687

5.  High-throughput Analysis of Large Microscopy Image Datasets on CPU-GPU Cluster Platforms.

Authors:  George Teodoro; Tony Pan; Tahsin M Kurc; Jun Kong; Lee A D Cooper; Norbert Podhorszki; Scott Klasky; Joel H Saltz
Journal:  IPDPS       Date:  2013-05

6.  Application Performance Analysis and Efficient Execution on Systems with multi-core CPUs, GPUs and MICs: A Case Study with Microscopy Image Analysis.

Authors:  George Teodoro; Tahsin Kurc; Guilherme Andrade; Jun Kong; Renato Ferreira; Joel Saltz
Journal:  Int J High Perform Comput Appl       Date:  2015-07-27       Impact factor: 1.942

7.  High-Performance Computational Analysis of Glioblastoma Pathology Images with Database Support Identifies Molecular and Survival Correlates.

Authors:  Jun Kong; Fusheng Wang; George Teodoro; Lee Cooper; Carlos S Moreno; Tahsin Kurc; Tony Pan; Joel Saltz; Daniel Brat
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2013-12

8.  Scalable analysis of Big pathology image data cohorts using efficient methods and high-performance computing strategies.

Authors:  Tahsin Kurc; Xin Qi; Daihou Wang; Fusheng Wang; George Teodoro; Lee Cooper; Michael Nalisnik; Lin Yang; Joel Saltz; David J Foran
Journal:  BMC Bioinformatics       Date:  2015-12-01       Impact factor: 3.169

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.