Literature DB >> 25418589

Improving signal-to-noise performance for DNA translocation in solid-state nanopores at MHz bandwidths.

Adrian Balan1, Bartholomeus Machielse, David Niedzwiecki, Jianxun Lin, Peijie Ong, Rebecca Engelke, Kenneth L Shepard, Marija Drndić.   

Abstract

DNA sequencing using solid-state nanopores is, in part, impeded by the relatively high noise and low bandwidth of the current state-of-the-art translocation measurements. In this Letter, we measure the ion current noise through sub 10 nm thick Si3N4 nanopores at bandwidths up to 1 MHz. At these bandwidths, the input-referred current noise is dominated by the amplifier's voltage noise acting across the total capacitance at the amplifier input. By reducing the nanopore chip capacitance to the 1-5 pF range by adding thick insulating layers to the chip surface, we are able to transition to a regime in which input-referred current noise (∼ 117-150 pArms at 1 MHz in 1 M KCl solution) is dominated by the effects of the input capacitance of the amplifier itself. The signal-to-noise ratios (SNRs) reported here range from 15 to 20 at 1 MHz for dsDNA translocations through nanopores with diameters from 4 to 8 nm with applied voltages from 200 to 800 mV. Further advances in bandwidth and SNR will require new amplifier designs that reduce both input capacitance and input-referred amplifier noise.

Entities:  

Keywords:  DNA; Nanopore; TEM; capacitance; sequencing; silicon nitride

Mesh:

Substances:

Year:  2014        PMID: 25418589     DOI: 10.1021/nl504345y

Source DB:  PubMed          Journal:  Nano Lett        ISSN: 1530-6984            Impact factor:   11.189


  17 in total

1.  Direct Sensing and Discrimination among Ubiquitin and Ubiquitin Chains Using Solid-State Nanopores.

Authors:  Iftach Nir; Diana Huttner; Amit Meller
Journal:  Biophys J       Date:  2015-05-05       Impact factor: 4.033

Review 2.  High bandwidth approaches in nanopore and ion channel recordings - A tutorial review.

Authors:  Andreas J W Hartel; Siddharth Shekar; Peijie Ong; Indra Schroeder; Gerhard Thiel; Kenneth L Shepard
Journal:  Anal Chim Acta       Date:  2019-01-25       Impact factor: 6.558

3.  Single-Stranded DNA Translocation Recordings through Solid-State Nanopores on Glass Chips at 10 MHz Measurement Bandwidth.

Authors:  Chen-Chi Chien; Siddharth Shekar; David J Niedzwiecki; Kenneth L Shepard; Marija Drndić
Journal:  ACS Nano       Date:  2019-09-03       Impact factor: 15.881

4.  Fabrication and practical applications of molybdenum disulfide nanopores.

Authors:  Michael Graf; Martina Lihter; Mukeshchand Thakur; Vasileia Georgiou; Juraj Topolancik; B Robert Ilic; Ke Liu; Jiandong Feng; Yann Astier; Aleksandra Radenovic
Journal:  Nat Protoc       Date:  2019-03-22       Impact factor: 13.491

Review 5.  Localized Nanopore Fabrication via Controlled Breakdown.

Authors:  Cuifeng Ying; Tianji Ma; Lei Xu; Mohsen Rahmani
Journal:  Nanomaterials (Basel)       Date:  2022-07-12       Impact factor: 5.719

6.  Measurement of DNA Translocation Dynamics in a Solid-State Nanopore at 100 ns Temporal Resolution.

Authors:  Siddharth Shekar; David J Niedzwiecki; Chen-Chi Chien; Peijie Ong; Daniel A Fleischer; Jianxun Lin; Jacob K Rosenstein; Marija Drndić; Kenneth L Shepard
Journal:  Nano Lett       Date:  2016-06-27       Impact factor: 11.189

7.  Electrophoretic Deformation of Individual Transfer RNA Molecules Reveals Their Identity.

Authors:  Robert Y Henley; Brian Alan Ashcroft; Ian Farrell; Barry S Cooperman; Stuart M Lindsay; Meni Wanunu
Journal:  Nano Lett       Date:  2015-12-02       Impact factor: 11.189

8.  Cross-Talk Between Ionic and Nanoribbon Current Signals in Graphene Nanoribbon-Nanopore Sensors for Single-Molecule Detection.

Authors:  Matthew Puster; Adrian Balan; Julio A Rodríguez-Manzo; Gopinath Danda; Jae-Hyuk Ahn; William Parkin; Marija Drndić
Journal:  Small       Date:  2015-10-26       Impact factor: 13.281

9.  Engineering adjustable two-pore devices for parallel ion transport and DNA translocations.

Authors:  Yung-Chien Chou; Joshua Chen; Chih-Yuan Lin; Marija Drndić
Journal:  J Chem Phys       Date:  2021-03-14       Impact factor: 3.488

10.  Prevention of Dielectric Breakdown of Nanopore Membranes by Charge Neutralization.

Authors:  Kazuma Matsui; Itaru Yanagi; Yusuke Goto; Ken-ichi Takeda
Journal:  Sci Rep       Date:  2015-12-04       Impact factor: 4.379

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