Literature DB >> 25418305

Fractal globules: a new approach to artificial molecular machines.

Vladik A Avetisov1, Viktor A Ivanov2, Dmitry A Meshkov3, Sergei K Nechaev4.   

Abstract

The over-damped relaxation of elastic networks constructed by contact maps of hierarchically folded fractal (crumpled) polymer globules was investigated in detail. It was found that the relaxation dynamics of an anisotropic fractal globule is very similar to the behavior of biological molecular machines like motor proteins. When it is perturbed, the system quickly relaxes to a low-dimensional manifold, M, with a large basin of attraction and then slowly approaches equilibrium, not escaping M. Taking these properties into account, it is suggested that fractal globules, even those made by synthetic polymers, are artificial molecular machines that can transform perturbations into directed quasimechanical motion along a defined path.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25418305      PMCID: PMC4241456          DOI: 10.1016/j.bpj.2014.10.019

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  16 in total

1.  The fractal globule as a model of chromatin architecture in the cell.

Authors:  Leonid A Mirny
Journal:  Chromosome Res       Date:  2011-01       Impact factor: 5.239

2.  Muscle structure and theories of contraction.

Authors:  A F HUXLEY
Journal:  Prog Biophys Biophys Chem       Date:  1957

3.  Dynamics on ultrametric spaces.

Authors: 
Journal:  Phys Rev Lett       Date:  1985-10-07       Impact factor: 9.161

4.  Looping probabilities in model interphase chromosomes.

Authors:  Angelo Rosa; Nils B Becker; Ralf Everaers
Journal:  Biophys J       Date:  2010-06-02       Impact factor: 4.033

5.  Nonlinear relaxation dynamics in elastic networks and design principles of molecular machines.

Authors:  Yuichi Togashi; Alexander S Mikhailov
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-16       Impact factor: 11.205

Review 6.  Modeling stochastic kinetics of molecular machines at multiple levels: from molecules to modules.

Authors:  Debashish Chowdhury
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

7.  Prevolutionary dynamics and the origin of evolution.

Authors:  Martin A Nowak; Hisashi Ohtsuki
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-12       Impact factor: 11.205

8.  An elastic network model based on the structure of the red blood cell membrane skeleton.

Authors:  J C Hansen; R Skalak; S Chien; A Hoger
Journal:  Biophys J       Date:  1996-01       Impact factor: 4.033

Review 9.  Mirror symmetry breaking at the molecular level.

Authors:  V Avetisov; V Goldanskii
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-15       Impact factor: 11.205

10.  How evolution makes proteins fold quickly.

Authors:  L A Mirny; V I Abkevich; E I Shakhnovich
Journal:  Proc Natl Acad Sci U S A       Date:  1998-04-28       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.