Literature DB >> 25417102

Building robust transcriptomes with master splicing factors.

Mohini Jangi1, Phillip A Sharp2.   

Abstract

Coherent splicing networks arise from many discrete splicing decisions regulated in unison. Here, we examine the properties of robust, context-specific splicing networks. We propose that a subset of key splicing regulators, or "master splicing factors," respond to environmental cues to establish and maintain tissue transcriptomes during development.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25417102      PMCID: PMC4243530          DOI: 10.1016/j.cell.2014.09.054

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  98 in total

Review 1.  The SR protein family of splicing factors: master regulators of gene expression.

Authors:  Jennifer C Long; Javier F Caceres
Journal:  Biochem J       Date:  2009-01-01       Impact factor: 3.857

2.  Negative autoregulation linearizes the dose-response and suppresses the heterogeneity of gene expression.

Authors:  Dmitry Nevozhay; Rhys M Adams; Kevin F Murphy; Kresimir Josic; Gábor Balázsi
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-11       Impact factor: 11.205

3.  Auto- and cross-regulation of the hnRNP L proteins by alternative splicing.

Authors:  Oliver Rossbach; Lee-Hsueh Hung; Silke Schreiner; Inna Grishina; Monika Heiner; Jingyi Hui; Albrecht Bindereif
Journal:  Mol Cell Biol       Date:  2009-01-05       Impact factor: 4.272

4.  A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart.

Authors:  Auinash Kalsotra; Xinshu Xiao; Amanda J Ward; John C Castle; Jason M Johnson; Christopher B Burge; Thomas A Cooper
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-15       Impact factor: 11.205

5.  An inducible change in Fox-1/A2BP1 splicing modulates the alternative splicing of downstream neuronal target exons.

Authors:  Ji-Ann Lee; Zhen-Zhi Tang; Douglas L Black
Journal:  Genes Dev       Date:  2009-09-17       Impact factor: 11.361

6.  Sexual back talk with evolutionary implications: stimulation of the Drosophila sex-determination gene sex-lethal by its target transformer.

Authors:  Scott G Siera; Thomas W Cline
Journal:  Genetics       Date:  2008-10-09       Impact factor: 4.562

7.  Regulation of vertebrate nervous system alternative splicing and development by an SR-related protein.

Authors:  John A Calarco; Simone Superina; Dave O'Hanlon; Mathieu Gabut; Bushra Raj; Qun Pan; Ursula Skalska; Laura Clarke; Danielle Gelinas; Derek van der Kooy; Mei Zhen; Brian Ciruna; Benjamin J Blencowe
Journal:  Cell       Date:  2009-09-04       Impact factor: 41.582

8.  A cell-based screen for splicing regulators identifies hnRNP LL as a distinct signal-induced repressor of CD45 variable exon 4.

Authors:  Justin D Topp; Jason Jackson; Alexis A Melton; Kristen W Lynch
Journal:  RNA       Date:  2008-08-21       Impact factor: 4.942

Review 9.  RNA and disease.

Authors:  Thomas A Cooper; Lili Wan; Gideon Dreyfuss
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

10.  Alternative isoform regulation in human tissue transcriptomes.

Authors:  Eric T Wang; Rickard Sandberg; Shujun Luo; Irina Khrebtukova; Lu Zhang; Christine Mayr; Stephen F Kingsmore; Gary P Schroth; Christopher B Burge
Journal:  Nature       Date:  2008-11-27       Impact factor: 49.962

View more
  73 in total

Review 1.  MECHANISMS IN ENDOCRINOLOGY: Alternative splicing: the new frontier in diabetes research.

Authors:  Jonàs Juan-Mateu; Olatz Villate; Décio L Eizirik
Journal:  Eur J Endocrinol       Date:  2015-12-01       Impact factor: 6.664

2.  Opposing roles of miR-294 and MBNL1/2 in shaping the gene regulatory network of embryonic stem cells.

Authors:  Da-Ren Wu; Kai-Li Gu; Jian-Cheng Yu; Xing Fu; Xi-Wen Wang; Wen-Ting Guo; Le-Qi Liao; Hong Zhu; Xiao-Shan Zhang; Jingyi Hui; Yangming Wang
Journal:  EMBO Rep       Date:  2018-05-07       Impact factor: 8.807

3.  Induced transcription and stability of CELF2 mRNA drives widespread alternative splicing during T-cell signaling.

Authors:  Michael J Mallory; Samuel J Allon; Jinsong Qiu; Matthew R Gazzara; Iulia Tapescu; Nicole M Martinez; Xiang-Dong Fu; Kristen W Lynch
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-13       Impact factor: 11.205

Review 4.  Alternative splicing and the evolution of phenotypic novelty.

Authors:  Stephen J Bush; Lu Chen; Jaime M Tovar-Corona; Araxi O Urrutia
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2017-02-05       Impact factor: 6.237

5.  Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources.

Authors:  Dinanath Sulakhe; Mark D'Souza; Sheng Wang; Sandhya Balasubramanian; Prashanth Athri; Bingqing Xie; Stefan Canzar; Gady Agam; T Conrad Gilliam; Natalia Maltsev
Journal:  Brief Bioinform       Date:  2019-09-27       Impact factor: 11.622

6.  A Global View of RNA-Protein Interactions Identifies Post-transcriptional Regulators of Root Hair Cell Fate.

Authors:  Shawn W Foley; Sager J Gosai; Dongxue Wang; Nur Selamoglu; Amelia C Sollitti; Tino Köster; Alexander Steffen; Eric Lyons; Fevzi Daldal; Benjamin A Garcia; Dorothee Staiger; Roger B Deal; Brian D Gregory
Journal:  Dev Cell       Date:  2017-04-24       Impact factor: 12.270

7.  Large-scale mapping of mammalian transcriptomes identifies conserved genes associated with different cell states.

Authors:  Yang Yang; Yu-Cheng T Yang; Jiapei Yuan; Zhi John Lu; Jingyi Jessica Li
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

8.  Minor differences in the molecular machinery mediating regulated membrane fusion has major impact on metabolic health.

Authors:  Ismael Valladolid-Acebes; Teresa Daraio; Kerstin Brismar; Tomas Hökfelt; Christina Bark
Journal:  Adipocyte       Date:  2016-01-08       Impact factor: 4.534

Review 9.  Proteomic and interactomic insights into the molecular basis of cell functional diversity.

Authors:  Isabell Bludau; Ruedi Aebersold
Journal:  Nat Rev Mol Cell Biol       Date:  2020-03-31       Impact factor: 94.444

Review 10.  Specificity and nonspecificity in RNA-protein interactions.

Authors:  Eckhard Jankowsky; Michael E Harris
Journal:  Nat Rev Mol Cell Biol       Date:  2015-08-19       Impact factor: 94.444

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.