Literature DB >> 25412574

Deciphering the scaling of single-molecule interactions using Jarzynski's equality.

Sangeetha Raman1, Thomas Utzig1, Theodoros Baimpos1, Buddha Ratna Shrestha1, Markus Valtiner1.   

Abstract

Unravelling the complexity of the macroscopic world relies on understanding the scaling of single-molecule interactions towards integral macroscopic interactions. Here, we demonstrate the scaling of single acid-amine interactions through a synergistic experimental approach combining macroscopic surface forces apparatus experiments and single-molecule force spectroscopy. This experimental framework is ideal for testing the well-renowned Jarzynski's equality, which relates work performed under non-equilibrium conditions with equilibrium free energy. Macroscopic equilibrium measurements scale linearly with the number density of interfacial bonds, providing acid-amine interaction energies of 10.9 ± 0.2 kT. Irrespective of how far from equilibrium single-molecule experiments are performed, the Jarzynski's free energy converges to 11 ± 1 kT. Our results validate the applicability of Jarzynski's equality to unravel the scaling of non-equilibrium single-molecule experiments to scenarios where large numbers of molecules interacts simultaneously in equilibrium. The developed scaling strategy predicts large-scale properties such as adhesion or cell-cell interactions on the basis of single-molecule measurements.

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Year:  2014        PMID: 25412574     DOI: 10.1038/ncomms6539

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  6 in total

1.  Arrhythmogenic cardiomyopathy related DSG2 mutations affect desmosomal cadherin binding kinetics.

Authors:  Mareike Dieding; Jana Davina Debus; Raimund Kerkhoff; Anna Gaertner-Rommel; Volker Walhorn; Hendrik Milting; Dario Anselmetti
Journal:  Sci Rep       Date:  2017-10-23       Impact factor: 4.379

2.  Computed Three-Dimensional Atomic Force Microscopy Images of Biopolymers Using the Jarzynski Equality.

Authors:  Takashi Sumikama; Filippo Federici Canova; David Z Gao; Marcos Penedo; Keisuke Miyazawa; Adam S Foster; Takeshi Fukuma
Journal:  J Phys Chem Lett       Date:  2022-06-09       Impact factor: 6.888

3.  Ranking of Molecular Biomarker Interaction with Targeted DNA Nucleobases via Full Atomistic Molecular Dynamics.

Authors:  Wenjun Zhang; Ming L Wang; Steven W Cranford
Journal:  Sci Rep       Date:  2016-01-11       Impact factor: 4.379

4.  Exploring the Sulfatase 1 Catch Bond Free Energy Landscape using Jarzynski's Equality.

Authors:  Volker Walhorn; Ann-Kristin Möller; Christian Bartz; Thomas Dierks; Dario Anselmetti
Journal:  Sci Rep       Date:  2018-11-15       Impact factor: 4.379

5.  Size compatibility and concentration dependent supramolecular host-guest interactions at interfaces.

Authors:  Jintae Park; Jinwoo Park; Jinhoon Lee; Chanoong Lim; Dong Woog Lee
Journal:  Nat Commun       Date:  2022-01-10       Impact factor: 17.694

6.  Visualization of Ion|Surface Binding and In Situ Evaluation of Surface Interaction Free Energies via Competitive Adsorption Isotherms.

Authors:  Pierluigi Bilotto; Alexander M Imre; Dominik Dworschak; Laura L E Mears; Markus Valtiner
Journal:  ACS Phys Chem Au       Date:  2021-08-23
  6 in total

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