Matthew K Matlock1, Tyler B Hughes1, S Joshua Swamidass1. 1. Division of Biology and Biological Sciences and Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63130, USA.
Abstract
UNLABELLED: Cytochrome P450 enzymes (P450s) are metabolic enzymes that process the majority of FDA-approved, small-molecule drugs. Understanding how these enzymes modify molecule structure is key to the development of safe, effective drugs. XenoSite server is an online implementation of the XenoSite, a recently published computational model for P450 metabolism. XenoSite predicts which atomic sites of a molecule--sites of metabolism (SOMs)--are modified by P450s. XenoSite server accepts input in common chemical file formats including SDF and SMILES and provides tools for visualizing the likelihood that each atomic site is a site of metabolism for a variety of important P450s, as well as a flat file download of SOM predictions. AVAILABILITY AND IMPLEMENTATION: XenoSite server is available at http://swami.wustl.edu/xenosite.
UNLABELLED: Cytochrome P450 enzymes (P450s) are metabolic enzymes that process the majority of FDA-approved, small-molecule drugs. Understanding how these enzymes modify molecule structure is key to the development of safe, effective drugs. XenoSite server is an online implementation of the XenoSite, a recently published computational model for P450 metabolism. XenoSite predicts which atomic sites of a molecule--sites of metabolism (SOMs)--are modified by P450s. XenoSite server accepts input in common chemical file formats including SDF and SMILES and provides tools for visualizing the likelihood that each atomic site is a site of metabolism for a variety of important P450s, as well as a flat file download of SOM predictions. AVAILABILITY AND IMPLEMENTATION: XenoSite server is available at http://swami.wustl.edu/xenosite.
Authors: Benjamin J Blaise; Gonçalo D S Correia; Gordon A Haggart; Izabella Surowiec; Caroline Sands; Matthew R Lewis; Jake T M Pearce; Johan Trygg; Jeremy K Nicholson; Elaine Holmes; Timothy M D Ebbels Journal: Nat Protoc Date: 2021-07-28 Impact factor: 13.491
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