| Literature DB >> 25399509 |
Daljit S Matharu1, Daniel P Flaherty, Denise S Simpson, Chad E Schroeder, Donghoon Chung, Dan Yan, James W Noah, Colleen B Jonsson, E Lucile White, Jeffrey Aubé, Richard K Plemper, William E Severson, Jennifer E Golden.
Abstract
A quinazolinedione-derived screening hit 2 was discovered with cellular antiviral activity against respiratory syncytial virus (CPE EC50 = 2.1 μM), moderate efficacy in reducing viral progeny (4.2 log at 10 μM), and marginal cytotoxic liability (selectivity index, SI ∼ 24). Scaffold optimization delivered analogs with improved potency and selectivity profiles. Most notable were compounds 15 and 19 (EC50 = 300-500 nM, CC50 > 50 μM, SI > 100), which significantly reduced viral titer (>400,000-fold), and several analogs were shown to block the activity of the RNA-dependent RNA-polymerase complex of RSV.Entities:
Mesh:
Substances:
Year: 2014 PMID: 25399509 PMCID: PMC4281105 DOI: 10.1021/jm500902x
Source DB: PubMed Journal: J Med Chem ISSN: 0022-2623 Impact factor: 7.446
Figure 1(A) Structure and data for sulfonylpyrrolidine-derived probe 1, ML232. (B) Structure and data for hit quinazolinedione 2 with highlighted regions of structure–activity relationship optimization.
Scheme 1Chemical Synthesis of Quinazolinedione and Quinazolinone Analogs
Reagents: (a) DIPEA, HATU, methyl 4-(aminomethyl)benzoate hydrochloride, DMF, rt, 2 h, 68%; (b) DIPEA, 1,1-carbonyldiimidazole, CH2Cl2, reflux, 16 h, 95%; (c) LiOH·H2O, THF, 40 °C, 1 h, 88%; (d) DIPEA, HATU, 3-methoxypropylamine or other amine for R2, DMF, rt, 2 h, 44–76%; (e) K2CO3, 4-isopropylbenzyl bromide other aryl halide for R1, DMF, 40 °C, 16 h, 11–71%; (f) DIPEA, EDCI, HOBt, methyl 4-(aminomethyl)benzoate hydrochloride, CH2Cl2, rt, 74%; (g) 3- or 4-isopropylphenylacetic acid, (COCl)2, cat. DMF, CH2Cl2, then pyridine, CH2Cl2, 1.5 h, rt, 93–100%; (h) LiOH, THF, H2O, 40 °C, 20 h; (i) 3-methoxypropylamine, EDCI, HOBt, DIPEA, CH2Cl2, rt, 10–22% over 2 steps.
hRSV CPE Assay Potency, Cytotoxicity, Selectivity Index, and Logarithmic Reduction in Viral Plaques for Analogs with Structural Variations in the (R1) Region of Hit Compound 2
| entry | cmpd | R1 | RSV CPE potency
± standard deviation EC50 (μM) | HEp-2 cellular toxicity ± standard deviation
CC50 (μM) | selectivity index (CC50/EC50) | viral titer reduction at 10 μM (log) |
|---|---|---|---|---|---|---|
| 1 | CH2-4-methylphenyl | 2.1 ± 0.5 | >50.0 | >23.8 | 4.2 | |
| 2 | CH2-2-bromophenyl | >50.0 | 8.2 ± 0.2 | <0.2 | NT | |
| 3 | CH2-3-bromophenyl | 2.2 ± 0.1 | 3.7 ± 0.4 | 1.7 | NT | |
| 4 | CH2-4-bromophenyl | 0.9 ± 0.2 | >50.0 | >55.6 | 4.1 | |
| 5 | CH2-2-fluorophenyl | >50.0 | 7.3 ± 1.0 | <0.2 | NT | |
| 6 | CH2-4-fluorophenyl | 5.1 ± 0.4 | 7.6 ± 0.2 | 1.5 | NT | |
| 7 | CH2-4-chlorophenyl | 6.7 ± 1.9 | >50.0 | >7.5 | 3.1 | |
| 8 | CH2-4-methoxyphenyl | 2.0 ± 0.9 | >50.0 | >25.0 | 2.7 | |
| 9 | CH2-4-nitrophenyl | 0.5 ± 0.05 | >50.0 | >100.0 | 5.6 | |
| 10 | CH2-4-trifluoromethylphenyl | 1.3 ± 0.1 | >50.0 | >38.5 | 2.7 | |
| 11 | CH2-4-nitrilephenyl | 1.3 ± 0.2 | 12.5 ± 1.2 | 7.7 | 4.2 | |
| 12 | CH2-4-ethylphenyl | 1.0 ± 0.05 | >50.0 | >38.5 | 5.9 | |
| 13 | CH2-4-isopropylphenyl | 0.3 ± 0.03 | >50.0 | >166.7 | 6.7 | |
| 14 | CH2-5-benzooxadiazole | 4.9 ± 0.7 | >50.0 | >10.2 | 2.1 | |
| 15 | CH2-3-(5-methylisoxazole) | >50.0 | 7.7 ± 0.7 | <0.2 | NT | |
| 16 | CH2-2-pyridyl | >50.0 | 16.0 ± 0.3 | <0.3 | 0.1 | |
| 17 | CH2-3-pyridyl | >50.0 | 8.0 ± 0.3 | <0.2 | 0.9 |
Data were averaged from ≥3 experiments.
Data were averaged from ≥2 experiments.
Data were averaged from two separate compound lots.
Data were averaged from three separate compound lots.
Data were obtained from a 3-day exposure experiment versus 5-day duration due to precipitation of compound after 3 days. NT = not tested. Data were analyzed using Microsoft Excel 2010.
hRSV CPE Assay Potency, Cytotoxicity, Selectivity Index,and Logarithmic Reduction in Viral Plaques for Analogs with Structural Variations in the (R2) Region of Hit Compound 2
| entry | cmpd | R1 | RSV CPE potency
± standard deviation EC50 (μM) | HEp-2 cellular toxicity ± standard deviation
CC50 (μM) | selectivity index (CC50/EC50) | viral titer reduction at 10 μM (log) |
|---|---|---|---|---|---|---|
| 1 | NH(CH2)3OCH3 | 2.1 ± 0.5 | > 50.0 | >23.8 | 4.2 | |
| 2 | NH(CH2)3OCH2CH3 | 1.9 ± 0.2 | 8.5 ± 0.3 | 4.4 | NT | |
| 3 | NH(CH2)3OCH(CH3)2 | 2.0 ± 0.2 | 19.3 ± 0.9 | 9.8 | NT | |
| 4 | NH(CH2)3N(CH3)2 | 9.5 ± 0.4 | 16.6 ± 1.5 | 1.8 | NT | |
| 5 | NH(CH2)4OCH3 | 0.8 ± 0.05 | 6.5 ± 0.3 | 7.8 | 2.1 | |
| 6 | NH(CH2)2OCH3 | 2.2 ± 1.4 | >50.0 | 22.7 | NT | |
| 7 | NH(CH2)-(3-oxetane) | 0.7 ± 0.1 | 47.0 ± 1.9 | 66.1 | 5.1 | |
| 8 | NH(CH2)-cyclobutane | 1.0 ± 0.08 | 7.6 ± 0.3 | 7.9 | 1.2 | |
| 9 | >50.0 | 17.5 ± 1.1 | <0.4 | NT | ||
| 10 | >50.0 | 5.4 ± 0.3 | <0.1 | NT | ||
| 11 | >50.0 | 7.3 ± 1.3 | <0.2 | NT | ||
| 12 | NHCH3 | 2.2 ± 0.9 | 45.3 ± 1.7 | 21.1 | NT | |
| 13 | N(CH3)2 | >50.0 | 10.1 ± 0.2 | <0.2 | NT | |
| 14 | NH- | 0.7 ± 0.03 | 8.4 ± 0.3 | 12.1 | 5.5 | |
| 15 | NH-cyclohexyl | >50.0 | >50.0 | NA | NT | |
| 16 | NH-phenyl | >50.0 | >50.0 | NA | NT | |
| 17 | NH-benzyl | >50.0 | 41.8 ± 7.9 | NA | NT | |
| 18 | NH-CH2-2-furyl | >50.0 | >50.0 | NA | NT | |
| 19 | NH-2-thiazole | >50.0 | >50.0 | NA | NT | |
| 20 | NH-4-pyridyl | 1.0 ± 0.04 | 1.8 ± 0.4 | 1.8 | 3.5 |
Data were an average of ≥3 experiments.
Data were an average of ≥2 experiments.
Data were an average of outcomes from two separate lots of compound 2.
Data were obtained from a 3-day exposure experiment versus 5-day duration due to precipitation of compound after 3 days. NT = not tested; NA = not applicable. Data were analyzed using Microsoft Excel 2010.
hRSV CPE Assay Potency, Cytotoxicity, Selectivity Index, Logarithmic Reduction in Viral Plaques, and Solubility Assessments for Analogs with Tandem Structural Variations in the (R1) and (R2) Regions of Hit Compound 2
| solubility (μM) | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| entry | cmpd | R1 | R2 | RSV CPE potency
± standard deviation EC50 (μM) | HEp-2 cellular toxicity ± standard
deviation
CC50 (μM) | selectivity index (CC50/ EC50) | viral titer reduction at 10 μM (log) | PBS | media |
| 1 | CH2-4-methylphenyl | NH(CH2)3OCH3 | 2.1 ± 0.5 | >50.0 | >23.8 | 4.2 | 0.1 | 2.5 | |
| 2 | CH2-4-nitrophenyl | NHCH2-3-oxetane | 1.3 ± .05 | .05 > 50.0 | >38.5 | >6.2 | 1.4 | 7.2 | |
| 3 | CH2-4- | NHCH2-3-oxetane | 0.4 ± .01 | 3.6 ± .08 | 9.0 | 5.8 | NT | NT | |
| 4 | CH2-4-CO2H-phenyl | NHCH2-3-oxetane | >50.0 | >50.0 | NA | NT | 98.1 | NT | |
| 5 | CH2-4-N(CH3)2-phenyl | NHCH2-3-oxetane | 1.1 ± 0.2 | 44.7 ± 7.2 | 41.8 | >6.2 | 11.2 | 18.5 | |
| 6 | CH2-4- | NHCH2-3-oxetane | 1.6 ± .08 | 3.7 ± 0.3 | 2.3 | 3.4 | NT | NT | |
| 7 | CH2-4- | NHCH2-2-furyl | 1.2 ± 0.1 | >50.0 | >41.7 | 2.8 | 0.3 | NT | |
| 8 | CH2-4- chlorophenyl | NHCH2-2-furyl | 0.8 ± .01 | >50.0 | >62.5 | NT | NT | 10.2 | |
| 9 | CH2-4- | NH-2-CH3O-pyridyl | 0.5 ± .06 | <1.6 | <3.3 | NT | NT | NT | |
Data were an average of ≥3 experiments.
Data are an average of ≥2 experiments.
Kinetic solubility in 1×PBS, pH 7.4.
Kinetic solubility in CPE assay media: (DMEM/F12(r) (Sigma, Cat # D6434)/1×Pen/Strep/Glutamine (Gibco, Cat # 10378)/2% Heat Inactivated FBS (Gibco Cat # 10082)). NT = not tested; NA = not applicable. Data were analyzed using Microsoft Excel 2010.
Data were an average of outcomes from two separate lots of compound 2.
Figure 2Activity of quinazolinones and azaquinazolinediones.
Comparative SAR, Physiochemical, and In Vitro ADME Data for Select Analogs
| solubility (μM) | aqueous stability (%) | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| entry | analog | RSV CPE potency
± standard deviation EC50 (μM) | HEp-2 cellular toxicity ± standard
deviation
CC50 (μM) | selectivity index (CC50/ EC50) | viral titer reduction at 10 μM (log) | PBS | media | PBS | 1:1 PBS/ACN | Pe, PAMPA
permeability (×10–6 cm/s) | hepatocyte
toxicity LC50 (μM) |
| 1 | 2.1 ± 0.5 | >50.0 | 23.8 | 4.2 | 0.1 | NT | 88.1 | 94.0 | NT | NT | |
| 2 | 0.5 ± 0.05 | >50.0 | >100 | 5.6 | 1.3 | 2.8 | 83.4 | 94.9 | 364/349/356 | >50 | |
| 3 | 0.3 ± 0.03 | >50.0 | >166.7 | 6.7 | 0.4 | 10.2 | 27.0 | 100 | 718/631/703 | >30 | |
| 4 | 1.1 ± 0.2 | 44.7 ± 7.2 | 41.8 | >6.2 | 11.2 | 18.5 | 90.2 | 100 | 780/686/514 | >50 | |
Data were an average of ≥3 experiments.
Data were an average of outcomes from three separate lots of compound 15.
Data were an average of outcomes from two separate lots of compound 19.
Data are an average of ≥2 experiments.
Data were obtained from a 3-day exposure experiment versus 5-day duration due to precipitation of compound after 3 days.
Data were an average of outcomes from two separate lots of compound 15.
Data collected by Ms. Arianna Mangravita-Novo at the Conrad Prebys Sanford Burnham Medical Research Institute.
Kinetic solubility in 1× PBS, pH 7.4.
Kinetic solubility in CPE assay media: (DMEM/F12(r) (Sigma, Cat # D6434)/1× Pen/Strep/Glutamine (Gibco, Cat # 10378)/2% Heat Inactivated FBS (Gibco Cat # 10082)).
Data collected by Mr. Patrick Porubsky at the University of Kansas Analytical Chemistry Core, Specialized Chemistry Center.
Results are represented as percent parent remaining after 48 h; Stability assessment was done independently in PBS or with 1:1 PBS and acetonitrile; the latter was used to account for limitations in solubility affecting PBS results.
PAMPA donor pH: 5.0/6.2/7.4, acceptor pH: 7.4; controls: verapamil (222/1097/1936–highly permeable), metoprolol (14/60/472–moderately permeable), ranitidine (<10/<10/<10–poorly permeable).
PAMPA done in PBS, no additives.
PAMPA done with 20% acetontrile added to compensate for PBS solubility. Without acetonitrile, Pe was insignificant at each pH.
Fa2N-4 immortalized human hepatocytes. Data were analyzed using Microsoft Excel 2010; NT = not tested.
Off Target Profiling Results for Compound 19 at 10 μM (>50% Inhibition)
| entry | biological target | Eurofins
Panlabs assay code | species | percent inhibition
(%) |
|---|---|---|---|---|
| 1 | calcium channel, L-type, benzothiazepine | 214510 | rat | 52 |
| 2 | calcium channel, L-type, dihydropyridine | 214600 | rat | 70 |
| 3 | cannabinoid CB1 | 217030 | human | 86 |
| 4 | serotonin (5-hydroxytryptamine) 5-HT2B | 271700 | human | 54 |
| 5 | norepinephrine transporter | 204410 | human | 54 |
Detailed assay descriptions can be found at https://www.eurofinspanlabs.com/catalog.
A full list of targets and percent inhibition by compound 19 is provided in the Supporting Information.
Figure 3Transient RSV luciferase replicon reporter assay to determine RdRp activity in the presence of the quinazolinedione analogs. Values were normalized for vehicle (DMSO) treated samples and represent averages of three independent experiments, each performed in duplicate. Error bars represent standard deviation; EC50 values and 95% confidence intervals (in parentheses) are shown for each compound.