Literature DB >> 25393218

Aspherical-atom modeling of coordination compounds by single-crystal X-ray diffraction allows the correct metal atom to be identified.

Birger Dittrich1, Claudia M Wandtke, Alke Meents, Kevin Pröpper, Kartik Chandra Mondal, Prinson P Samuel, Nurul Amin Sk, Amit Pratap Singh, Herbert W Roesky, Navdeep Sidhu.   

Abstract

Single-crystal X-ray diffraction (XRD) is often considered the gold standard in analytical chemistry, as it allows element identification as well as determination of atom connectivity and the solid-state structure of completely unknown samples. Element assignment is based on the number of electrons of an atom, so that a distinction of neighboring heavier elements in the periodic table by XRD is often difficult. A computationally efficient procedure for aspherical-atom least-squares refinement of conventional diffraction data of organometallic compounds is proposed. The iterative procedure is conceptually similar to Hirshfeld-atom refinement (Acta Crystallogr. Sect. A- 2008, 64, 383-393; IUCrJ. 2014, 1,61-79), but it relies on tabulated invariom scattering factors (Acta Crystallogr. Sect. B- 2013, 69, 91-104) and the Hansen/Coppens multipole model; disordered structures can be handled as well. Five linear-coordinate 3d metal complexes, for which the wrong element is found if standard independent-atom model scattering factors are relied upon, are studied, and it is shown that only aspherical-atom scattering factors allow a reliable assignment. The influence of anomalous dispersion in identifying the correct element is investigated and discussed.
© 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  X-ray diffraction; anomalous dispersion; carbenes; coordination compounds; density functional calculations

Year:  2014        PMID: 25393218     DOI: 10.1002/cphc.201402600

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  5 in total

Review 1.  Recent Advances in the Domain of Cyclic (Alkyl)(Amino) Carbenes.

Authors:  Saroj Kumar Kushvaha; Ankush Mishra; Herbert W Roesky; Kartik Chandra Mondal
Journal:  Chem Asian J       Date:  2022-02-26

2.  Accurate Bond Lengths to Hydrogen Atoms from Single-Crystal X-ray Diffraction by Including Estimated Hydrogen ADPs and Comparison to Neutron and QM/MM Benchmarks.

Authors:  Birger Dittrich; Jens Lübben; Stefan Mebs; Armin Wagner; Peter Luger; Ralf Flaig
Journal:  Chemistry       Date:  2017-03-15       Impact factor: 5.236

3.  Refinement of anomalous dispersion correction parameters in single-crystal structure determinations.

Authors:  Florian Meurer; Oleg V Dolomanov; Christoph Hennig; Norbert Peyerimhoff; Florian Kleemiss; Horst Puschmann; Michael Bodensteiner
Journal:  IUCrJ       Date:  2022-07-20       Impact factor: 5.588

4.  Estimating temperature-dependent anisotropic hydrogen displacements with the invariom database and a new segmented rigid-body analysis program.

Authors:  Jens Lübben; Luc J Bourhis; Birger Dittrich
Journal:  J Appl Crystallogr       Date:  2015-11-10       Impact factor: 3.304

5.  Using invariom modelling to distinguish correct and incorrect central atoms in `duplicate structures' with neighbouring 3d elements.

Authors:  Claudia M Wandtke; Matthias Weil; Jim Simpson; Birger Dittrich
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2017-09-29
  5 in total

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