Literature DB >> 25392365

Standardization of Nucleic Acid Tests for Clinical Measurements of Bacteria and Viruses.

Jernej Pavšič1, Alison S Devonshire2, Helen Parkes3, Heinz Schimmel4, Carole A Foy3, Maria Karczmarczyk4, Ion Gutiérrez-Aguirre5, Isobella Honeyborne6, Jim F Huggett3, Timothy D McHugh6, Mojca Milavec5, Heinz Zeichhardt7, Jana Žel5.   

Abstract

Nucleic acid-based tests for infectious diseases currently used in the clinical laboratory and in point-of-care devices are diverse. Measurement challenges associated with standardization of quantitative viral load testing are discussed in relation to human cytomegalovirus, BK virus, and Epstein-Barr virus, while the importance of defining the performance of qualitative methods is illustrated with Mycobacterium tuberculosis and influenza virus. The development of certified reference materials whose values are traceable to higher-order standards and reference measurement procedures, using, for instance, digital PCR, will further contribute to the understanding of analytical performance characteristics and promote clinical data comparability.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2014        PMID: 25392365      PMCID: PMC4473239          DOI: 10.1128/JCM.02136-14

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  43 in total

1.  A multiplex one-step real-time RT-PCR assay for influenza surveillance.

Authors:  I Huber; H Campe; D Sebah; C Hartberger; R Konrad; M Bayer; U Busch; A Sing
Journal:  Euro Surveill       Date:  2011-02-17

2.  BK virus genotype variance and discordant BK viremia PCR assay results.

Authors:  J Trofe-Clark; T Sparkes; C Gentile; V Van Deerlin; D Sawinski; R D Bloom
Journal:  Am J Transplant       Date:  2013-02-22       Impact factor: 8.086

Review 3.  Xpert® MTB/RIF assay for pulmonary tuberculosis and rifampicin resistance in adults.

Authors:  Karen R Steingart; Ian Schiller; David J Horne; Madhukar Pai; Catharina C Boehme; Nandini Dendukuri
Journal:  Cochrane Database Syst Rev       Date:  2014-01-21

4.  Simultaneous detection of influenza viruses A and B using real-time quantitative PCR.

Authors:  L J van Elden; M Nijhuis; P Schipper; R Schuurman; A M van Loon
Journal:  J Clin Microbiol       Date:  2001-01       Impact factor: 5.948

5.  Comparison of the FilmArray RP, Verigene RV+, and Prodesse ProFLU+/FAST+ multiplex platforms for detection of influenza viruses in clinical samples from the 2011-2012 influenza season in Belgium.

Authors:  Liesbeth Van Wesenbeeck; Hanne Meeuws; Andrea Van Immerseel; Gabriela Ispas; Kristiane Schmidt; Lieselot Houspie; Marc Van Ranst; Lieven Stuyver
Journal:  J Clin Microbiol       Date:  2013-07-03       Impact factor: 5.948

6.  Comparative evaluation of three automated systems for DNA extraction in conjunction with three commercially available real-time PCR assays for quantitation of plasma Cytomegalovirus DNAemia in allogeneic stem cell transplant recipients.

Authors:  Dayana Bravo; María Ángeles Clari; Elisa Costa; Beatriz Muñoz-Cobo; Carlos Solano; María José Remigia; David Navarro
Journal:  J Clin Microbiol       Date:  2011-06-22       Impact factor: 5.948

7.  Marked variability of BK virus load measurement using quantitative real-time PCR among commonly used assays.

Authors:  Noah G Hoffman; Linda Cook; Ederlyn E Atienza; Ajit P Limaye; Keith R Jerome
Journal:  J Clin Microbiol       Date:  2008-06-18       Impact factor: 5.948

Review 8.  Advances in tuberculosis diagnostics: the Xpert MTB/RIF assay and future prospects for a point-of-care test.

Authors:  Stephen D Lawn; Peter Mwaba; Matthew Bates; Amy Piatek; Heather Alexander; Ben J Marais; Luis E Cuevas; Timothy D McHugh; Lynn Zijenah; Nathan Kapata; Ibrahim Abubakar; Ruth McNerney; Michael Hoelscher; Ziad A Memish; Giovanni Battista Migliori; Peter Kim; Markus Maeurer; Marco Schito; Alimuddin Zumla
Journal:  Lancet Infect Dis       Date:  2013-03-24       Impact factor: 25.071

9.  Comparison of commercial systems for extraction of nucleic acids from DNA/RNA respiratory pathogens.

Authors:  Genyan Yang; Dean E Erdman; Maja Kodani; John Kools; Michael D Bowen; Barry S Fields
Journal:  J Virol Methods       Date:  2010-10-27       Impact factor: 2.014

10.  Comparison of Xpert MTB/RIF with ProbeTec ET DTB and COBAS TaqMan MTB for direct detection of M. tuberculosis complex in respiratory specimens.

Authors:  Uladzimir Antonenka; Sabine Hofmann-Thiel; Laziz Turaev; Ainura Esenalieva; Mokhonim Abdulloeva; Evgeni Sahalchyk; Tarig Alnour; Harald Hoffmann
Journal:  BMC Infect Dis       Date:  2013-06-20       Impact factor: 3.090

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  16 in total

1.  Multicenter Evaluation of Whole-Blood Epstein-Barr Viral Load Standardization Using the WHO International Standard.

Authors:  Touyana Semenova; Julien Lupo; Sophie Alain; Gwladys Perrin-Confort; Laurence Grossi; Julie Dimier; Olivier Epaulard; Patrice Morand; Raphaële Germi
Journal:  J Clin Microbiol       Date:  2016-04-13       Impact factor: 5.948

Review 2.  The Future of Digital Polymerase Chain Reaction in Virology.

Authors:  Matthijs Vynck; Wim Trypsteen; Olivier Thas; Linos Vandekerckhove; Ward De Spiegelaere
Journal:  Mol Diagn Ther       Date:  2016-10       Impact factor: 4.074

3.  Absolute Quantification of RNA or DNA Using Acid Hydrolysis and Mass Spectrometry.

Authors:  Mark S Lowenthal; Eva Quittman; Karen W Phinney
Journal:  Anal Chem       Date:  2019-11-01       Impact factor: 6.986

Review 4.  BK Polyomavirus: Clinical Aspects, Immune Regulation, and Emerging Therapies.

Authors:  George R Ambalathingal; Ross S Francis; Mark J Smyth; Corey Smith; Rajiv Khanna
Journal:  Clin Microbiol Rev       Date:  2017-04       Impact factor: 26.132

5.  The use of digital PCR to improve the application of quantitative molecular diagnostic methods for tuberculosis.

Authors:  Alison S Devonshire; Denise M O'Sullivan; Isobella Honeyborne; Gerwyn Jones; Maria Karczmarczyk; Jernej Pavšič; Alice Gutteridge; Mojca Milavec; Pablo Mendoza; Heinz Schimmel; Fran Van Heuverswyn; Rebecca Gorton; Daniela Maria Cirillo; Emanuele Borroni; Kathryn Harris; Marinus Barnard; Anthenette Heydenrych; Norah Ndusilo; Carole L Wallis; Keshree Pillay; Thomas Barry; Kate Reddington; Elvira Richter; Erkan Mozioğlu; Sema Akyürek; Burhanettin Yalçınkaya; Muslum Akgoz; Jana Žel; Carole A Foy; Timothy D McHugh; Jim F Huggett
Journal:  BMC Infect Dis       Date:  2016-08-03       Impact factor: 3.090

6.  Droplet volume variability as a critical factor for accuracy of absolute quantification using droplet digital PCR.

Authors:  Alexandra Bogožalec Košir; Carla Divieto; Jernej Pavšič; Stefano Pavarelli; David Dobnik; Tanja Dreo; Roberto Bellotti; Maria Paola Sassi; Jana Žel
Journal:  Anal Bioanal Chem       Date:  2017-09-18       Impact factor: 4.142

Review 7.  A Basic Guide to Real Time PCR in Microbial Diagnostics: Definitions, Parameters, and Everything.

Authors:  Petr Kralik; Matteo Ricchi
Journal:  Front Microbiol       Date:  2017-02-02       Impact factor: 5.640

8.  Assessment of the real-time PCR and different digital PCR platforms for DNA quantification.

Authors:  Jernej Pavšič; Jana Žel; Mojca Milavec
Journal:  Anal Bioanal Chem       Date:  2015-10-31       Impact factor: 4.142

9.  Comparison of standard, quantitative and digital PCR in the detection of enterotoxigenic Bacteroides fragilis.

Authors:  Rachel V Purcell; John Pearson; Frank A Frizelle; Jacqueline I Keenan
Journal:  Sci Rep       Date:  2016-09-30       Impact factor: 4.379

10.  Detection of Rare Drug Resistance Mutations by Digital PCR in a Human Influenza A Virus Model System and Clinical Samples.

Authors:  Alexandra S Whale; Claire A Bushell; Paul R Grant; Simon Cowen; Ion Gutierrez-Aguirre; Denise M O'Sullivan; Jana Žel; Mojca Milavec; Carole A Foy; Eleni Nastouli; Jeremy A Garson; Jim F Huggett
Journal:  J Clin Microbiol       Date:  2015-12-09       Impact factor: 5.948

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