Literature DB >> 25388116

RNA-seq approaches for determining mRNA abundance in Leishmania.

Andrew Haydock1, Monica Terrao, Aarthi Sekar, Gowthaman Ramasamy, Loren Baugh, Peter J Myler.   

Abstract

High-throughput sequencing of cDNA copies of mRNA (RNA-seq) provides a digital read-out of mRNA levels over several orders of magnitude, as well as mapping the transcripts to the nucleotide level. Here we describe an RNA-seq approach that exploits the 39-nucleotide mini-exon or spliced leader (SL) sequence found at the 5' end of all Leishmania (and other trypanosomatid) mRNAs.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 25388116     DOI: 10.1007/978-1-4939-1438-8_12

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

Review 1.  Paving the Way: Contributions of Big Data to Apicomplexan and Kinetoplastid Research.

Authors:  Robyn S Kent; Emma M Briggs; Beatrice L Colon; Catalina Alvarez; Sara Silva Pereira; Mariana De Niz
Journal:  Front Cell Infect Microbiol       Date:  2022-06-06       Impact factor: 6.073

2.  Trypanosoma cruzi specific mRNA amplification by in vitro transcription improves parasite transcriptomics in host-parasite RNA mixtures.

Authors:  Rafael Luis Kessler; Daniela Parada Pavoni; Marco Aurelio Krieger; Christian Macagnan Probst
Journal:  BMC Genomics       Date:  2017-10-16       Impact factor: 3.969

3.  Multiplexed Spliced-Leader Sequencing: A high-throughput, selective method for RNA-seq in Trypanosomatids.

Authors:  Bart Cuypers; Malgorzata A Domagalska; Pieter Meysman; Géraldine de Muylder; Manu Vanaerschot; Hideo Imamura; Franck Dumetz; Thomas Wolf Verdonckt; Peter J Myler; Gowthaman Ramasamy; Kris Laukens; Jean-Claude Dujardin
Journal:  Sci Rep       Date:  2017-06-16       Impact factor: 4.379

Review 4.  Experimental Strategies to Explore Drug Action and Resistance in Kinetoplastid Parasites.

Authors:  Magali Van den Kerkhof; Yann G-J Sterckx; Philippe Leprohon; Louis Maes; Guy Caljon
Journal:  Microorganisms       Date:  2020-06-24

Review 5.  Functional genomics in sand fly-derived Leishmania promastigotes.

Authors:  Pedro J Alcolea; Ana Alonso; Ricardo Molina; Maribel Jiménez; Peter J Myler; Vicente Larraga
Journal:  PLoS Negl Trop Dis       Date:  2019-05-09

6.  Application of single-cell transcriptomics to kinetoplastid research.

Authors:  Emma M Briggs; Felix S L Warren; Keith R Matthews; Richard McCulloch; Thomas D Otto
Journal:  Parasitology       Date:  2021-03-08       Impact factor: 3.234

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.