Literature DB >> 25386055

Systems biology approaches for studying the pathogenesis of non-alcoholic fatty liver disease.

Ciarán P Fisher1, Andrzej M Kierzek1, Nick J Plant1, J Bernadette Moore1.   

Abstract

Non-alcoholic fatty liver disease (NAFLD) is a progressive disease of increasing public health concern. In western populations the disease has an estimated prevalence of 20%-40%, rising to 70%-90% in obese and type II diabetic individuals. Simplistically, NAFLD is the macroscopic accumulation of lipid in the liver, and is viewed as the hepatic manifestation of the metabolic syndrome. However, the molecular mechanisms mediating both the initial development of steatosis and its progression through non-alcoholic steatohepatitis to debilitating and potentially fatal fibrosis and cirrhosis are only partially understood. Despite increased research in this field, the development of non-invasive clinical diagnostic tools and the discovery of novel therapeutic targets has been frustratingly slow. We note that, to date, NAFLD research has been dominated by in vivo experiments in animal models and human clinical studies. Systems biology tools and novel computational simulation techniques allow the study of large-scale metabolic networks and the impact of their dysregulation on health. Here we review current systems biology tools and discuss the benefits to their application to the study of NAFLD. We propose that a systems approach utilising novel in silico modelling and simulation techniques is key to a more comprehensive, better targeted NAFLD research strategy. Such an approach will accelerate the progress of research and vital translation into clinic.

Entities:  

Keywords:  Metabolism; Modelling; Network; Non-alcoholic fatty liver disease; Regulation; Simulation; Systems biology

Mesh:

Year:  2014        PMID: 25386055      PMCID: PMC4223240          DOI: 10.3748/wjg.v20.i41.15070

Source DB:  PubMed          Journal:  World J Gastroenterol        ISSN: 1007-9327            Impact factor:   5.742


  86 in total

1.  Regulation of gene expression in flux balance models of metabolism.

Authors:  M W Covert; C H Schilling; B Palsson
Journal:  J Theor Biol       Date:  2001-11-07       Impact factor: 2.691

Review 2.  The virtual cell--a candidate co-ordinator for 'middle-out' modelling of biological systems.

Authors:  Dawn C Walker; Jennifer Southgate
Journal:  Brief Bioinform       Date:  2009-03-17       Impact factor: 11.622

3.  Three-dimensional in vitro cell culture leads to a marked upregulation of cell function in human hepatocyte cell lines--an important tool for the development of a bioartificial liver machine.

Authors:  C Selden; A Shariat; P McCloskey; T Ryder; E Roberts; H Hodgson
Journal:  Ann N Y Acad Sci       Date:  1999-06-18       Impact factor: 5.691

Review 4.  Animal models of nonalcoholic fatty liver disease/nonalcoholic steatohepatitis.

Authors:  Yoshihisa Takahashi; Yurie Soejima; Toshio Fukusato
Journal:  World J Gastroenterol       Date:  2012-05-21       Impact factor: 5.742

5.  Drug off-target effects predicted using structural analysis in the context of a metabolic network model.

Authors:  Roger L Chang; Li Xie; Lei Xie; Philip E Bourne; Bernhard Ø Palsson
Journal:  PLoS Comput Biol       Date:  2010-09-23       Impact factor: 4.475

6.  Systems biology elucidates common pathogenic mechanisms between nonalcoholic and alcoholic-fatty liver disease.

Authors:  Silvia Sookoian; Carlos J Pirola
Journal:  PLoS One       Date:  2013-03-13       Impact factor: 3.240

7.  The Edinburgh human metabolic network reconstruction and its functional analysis.

Authors:  Hongwu Ma; Anatoly Sorokin; Alexander Mazein; Alex Selkov; Evgeni Selkov; Oleg Demin; Igor Goryanin
Journal:  Mol Syst Biol       Date:  2007-09-18       Impact factor: 11.429

8.  Tuberculosis presenting as immune thrombocytopenic purpura.

Authors:  Fahir Ozkalemkas; Ridvan Ali; Atilla Ozkan; Tulay Ozcelik; Vildan Ozkocaman; Esra Kunt-Uzaslan; Beril Bahadir-Erdogan; Halis Akalin
Journal:  Ann Clin Microbiol Antimicrob       Date:  2004-09-06       Impact factor: 3.944

9.  Diagnosing fatty liver disease: a comparative evaluation of metabolic markers, phenotypes, genotypes and established biomarkers.

Authors:  Sabine Siegert; Zhonghao Yu; Rui Wang-Sattler; Thomas Illig; Jerzy Adamski; Jochen Hampe; Susanna Nikolaus; Stefan Schreiber; Michael Krawczak; Michael Nothnagel; Ute Nöthlings
Journal:  PLoS One       Date:  2013-10-09       Impact factor: 3.240

10.  QSSPN: dynamic simulation of molecular interaction networks describing gene regulation, signalling and whole-cell metabolism in human cells.

Authors:  Ciarán P Fisher; Nicholas J Plant; J Bernadette Moore; Andrzej M Kierzek
Journal:  Bioinformatics       Date:  2013-09-23       Impact factor: 6.937

View more
  9 in total

Review 1.  The role of dietary sugars and de novo lipogenesis in non-alcoholic fatty liver disease.

Authors:  J Bernadette Moore; Pippa J Gunn; Barbara A Fielding
Journal:  Nutrients       Date:  2014-12-10       Impact factor: 5.717

2.  Integration of Genome Scale Metabolic Networks and Gene Regulation of Metabolic Enzymes With Physiologically Based Pharmacokinetics.

Authors:  Elaina M Maldonado; Vytautas Leoncikas; Ciarán P Fisher; J Bernadette Moore; Nick J Plant; Andrzej M Kierzek
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2017-09-08

3.  Fagonia indica Repairs Hepatic Damage through Expression Regulation of Toll-Like Receptors in a Liver Injury Model.

Authors:  Fareeha Azam; Nadeem Sheikh; Gibran Ali; Asima Tayyeb
Journal:  J Immunol Res       Date:  2018-07-02       Impact factor: 4.818

4.  Multi-scale, whole-system models of liver metabolic adaptation to fat and sugar in non-alcoholic fatty liver disease.

Authors:  Elaina M Maldonado; Ciarán P Fisher; Dawn J Mazzatti; Amy L Barber; Marcus J Tindall; Nicholas J Plant; Andrzej M Kierzek; J Bernadette Moore
Journal:  NPJ Syst Biol Appl       Date:  2018-08-20

5.  Intermittent calorie restriction largely counteracts the adverse health effects of a moderate-fat diet in aging C57BL/6J mice.

Authors:  Fenni Rusli; Carolien Lute; Mark V Boekschoten; Miriam van Dijk; Klaske van Norren; Aswin L Menke; Michael Müller; Wilma T Steegenga
Journal:  Mol Nutr Food Res       Date:  2017-03-21       Impact factor: 5.914

6.  Synergistic interaction between lipid-loading and doxorubicin exposure in Huh7 hepatoma cells results in enhanced cytotoxicity and cellular oxidative stress: implications for acute and chronic care of obese cancer patients.

Authors:  S AlGhamdi; V Leoncikas; K E Plant; N J Plant
Journal:  Toxicol Res (Camb)       Date:  2015-08-20       Impact factor: 3.524

Review 7.  Computational Modeling in Liver Surgery.

Authors:  Bruno Christ; Uta Dahmen; Karl-Heinz Herrmann; Matthias König; Jürgen R Reichenbach; Tim Ricken; Jana Schleicher; Lars Ole Schwen; Sebastian Vlaic; Navina Waschinsky
Journal:  Front Physiol       Date:  2017-11-14       Impact factor: 4.566

Review 8.  The Atlas of Inflammation Resolution (AIR).

Authors:  Charles N Serhan; Shailendra K Gupta; Mauro Perretti; Catherine Godson; Eoin Brennan; Yongsheng Li; Oliver Soehnlein; Takao Shimizu; Oliver Werz; Valerio Chiurchiù; Angelo Azzi; Marc Dubourdeau; Suchi Smita Gupta; Patrick Schopohl; Matti Hoch; Dragana Gjorgevikj; Faiz M Khan; David Brauer; Anurag Tripathi; Konstantin Cesnulevicius; David Lescheid; Myron Schultz; Eva Särndahl; Dirk Repsilber; Robert Kruse; Angelo Sala; Jesper Z Haeggström; Bruce D Levy; János G Filep; Olaf Wolkenhauer
Journal:  Mol Aspects Med       Date:  2020-09-03

9.  The Ameliorative Effects of Fucoidan in Thioacetaide-Induced Liver Injury in Mice.

Authors:  Ming-Yang Tsai; Wei-Cheng Yang; Chuen-Fu Lin; Chao-Min Wang; Hsien-Yueh Liu; Chen-Si Lin; Jen-Wei Lin; Wei-Li Lin; Tzu-Chun Lin; Pei-Shan Fan; Kuo-Hsiang Hung; Yu-Wen Lu; Geng-Ruei Chang
Journal:  Molecules       Date:  2021-03-30       Impact factor: 4.411

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.