| Literature DB >> 25384384 |
Ngoc-Tu Nguyen1, Yang-Hoon Kim2, Seung Hyuck Bang1, Ji Hye Hong3, Soon Dong Kwon3, Jiho Min1.
Abstract
OBJECTIVES: Lysosome is the cell-organelle which is commonly used as biomonitoring tool in environmental pollution. In this study, the lysosomal proteomic of the yeast Saccharomyces cerevisiae was analyzed for utilization in the detection of toxic substances in mine water samples.Entities:
Keywords: Heavy metals; Lysosomal proteomic; Lysosomal response; Mine water; Pharmaceuticals
Year: 2014 PMID: 25384384 PMCID: PMC4243728 DOI: 10.5620/eht.e2014019
Source DB: PubMed Journal: Environ Health Toxicol ISSN: 2233-6567
Characteristics of S. cerevisiae strains, plasmids and oligonucleotides used in this study
| Strain/plasmid/oligonucleotide | Relevant genotype/sequence | Reference/purpose |
|---|---|---|
| 2805 | ||
| NNTM | 2805, | This study |
| NNT1 | 2805, | This study |
| Plasmid | ||
| pYES2.0 | Invitrogen | |
| pYES2.0::PRB1::GFP | This study | |
| Oligonucleotide | ||
| GCCAAGCTTATGAAGTTAGAAAATACTC | F. primer for pYES2::PRB1 | |
| GCGGCGAGCTCAATAATATTCAATTTAT | R. primer for pYES2::PRB1 | |
| ATAGAGCTCGTCAGCAAGGGCGAGGAGCT | F. primer for pYES2::PRB1::GFP | |
| ATAGCGGCCGCCTTGTACAGCTCGTC | R. primer for pYES2::PRB1::GFP | |
F, forward; R, reverse.
Figure 1.The 2-dimensional electrophoresis map showed the location of differentially expressd proteins in lysosomes of S. cerevisiae in response to (A) no chemical, (B) tetracycline, and (C) NaAsO2. The proteins were separated with pH gradient ranging from 4 to 7 and the molecular weights that were also indicated.
Lists of the differentially expressed lysosomal proteins of S. cerevisiae in response to NaAsO2 and tetracycline.
| Spot name | DrAtQin nomfl Protein name | Fold change | ||
|---|---|---|---|---|
| Control | Tetracycline | NaAsO2 | ||
| APE1 | Aminopeptidase I | 1 | 1.65 | 1.73 |
| ATG7 | Ubiquitin-like modifier activating | 1 | 1.21 | 1.37 |
| ATO3 | Ammonia transport outward 3 | 1 | ND | 1.36 |
| BXI1 | Bax inhibitor 1 | 1 | 1.94 | ND |
| ENO2 | Phosphopyruvate hydrolase | 1 | 1.42 | 1.1 |
| PHM6 | Phosphate metabolism | 1 | 1.45 | ND |
| PRB1 | Vacuolar protease B | 1 | 1.63 | 1.82 |
| SGA1 | Sporulation-specific glycoamylase | 1 | ND | 1.85 |
| STP1 | Tyrosine phosphatase | 1 | ND | 1.83 |
| TRX2 | Thioredoxin 2 | 1 | 1.71 | ND |
| VPS45 | Vacuolar protein sorting 45 | 1 | ND | 1.62 |
| ZPS1 | Putative GPI-anchored protein | 1 | 1.87 | ND |
| ZRT3 | Zinc-regulated transporter 3 | 1 | 1.5 | ND |
| ZWF1 | Glucose-6-phosphate dehydrogenase | 1 | 1.97 | 1.36 |
ND, not detected.
Figure 2.The expression of GFP in lysosome of S. cerevisiae (A) NNTM strain (control strain containing plasmid pYES2), (B) NNT1 strain (recombinant strain containing plasmid pYES2::PRB1::GFP).
Figure 3.The ratio of GFP intensity in exposing the strain NNT1 (recombinant strain containing plasmid pYES2::PRB1::GFP) with (A) sodium meta-arsenite, (B) (CdNO3)2 4H2O, (C) tetracycline, and (D) aspirin.
Figure 4.The ratio of GFP intensity in exposing the strain NNT1 (recombinant strain containing plasmid pYES2::PRB1::GFP) with (A)-(D) water sample 1, 3, 4, and 5. These samples were detectable by the response of GFP; (E)-(G) water sample 2, 6, and 7 which were not detected.
The component concentrations of mine water samples (mg/L)
| Sample | Mine DY influent | Mine SJ-influent | Mine DY-effluent | Mine GJ-influent | Mine DS-influent | Mine IG-influent | Mine GJ-effluent |
|---|---|---|---|---|---|---|---|
| pH | 6.83 | 5.89 | 7.35 | 6.40 | ND | 2.66 | 6.75 |
| Temperature (°C) | 17.10 | 17.60 | 18.30 | 19.40 | ND | 20.60 | 17.70 |
| Dissolved oxygen | 5.85 | 6.50 | 5.79 | 5.31 | 5. 53 | 3.24 | 5.09 |
| Oxidation-reduction potential (mv) | 40.10 | 12.40 | 120.10 | 119.50 | 267.90 | 515.00 | 147.50 |
| Fe2+ | 2.70 | 6.50 | ND | 3.19 | 18.20 | 12.30 | ND |
| Alkalinity | 103.00 | 13.00 | 95.00 | 67.00 | 0.00 | 12.30 | 40.00 |
| Suspended solid | 34.00 | ND | 17.00 | 9.00 | 11.00 | 6.00 | ND |
| As | ND | ND | ND | ND | ND | 0.71 | ND |
| P | 0.74 | ND | 0.79 | 0.76 | ND | ND | 0.73 |
| S | 168.12 | 72.79 | 166.04 | 185.31 | 540.51 | 409.32 | 178.15 |
| Si | 1.40 | 2.19 | 1.15 | 2.67 | 14.12 | 13.63 | 2.39 |
| Al | 1.34 | ND | ND | 0.91 | 12.39 | 33.38 | ND |
| Ca | 140.90 | 79.15 | 142.75 | 159.20 | 312.44 | 100.48 | 158.33 |
| Cd | ND | ND | ND | ND | 0.06 | 0.13 | ND |
| Co | ND | 0.02 | ND | ND | 0.78 | 0.06 | ND |
| Cr | ND | ND | ND | ND | ND | ND | ND |
| Cu | ND | 3.98 | ND | ND | 4.01 | 15.06 | ND |
| Fe | 7.16 | 0.07 | 1.85 | 6.20 | 111.37 | 198.72 | ND |
| K | 0.64 | 0.52 | 0.45 | 0.41 | 1.15 | 0.31 | 0.37 |
| Mg | 56.86 | 6.68 | 55.20 | 29.11 | 111.37 | 17.60 | 27.55 |
| Mn | 3.23 | 1.13 | 2.37 | 2.65 | 51.30 | 8.44 | 0.29 |
| Na | 1.24 | 6.34 | 1.07 | 1.97 | 17.72 | 9.73 | 1.72 |
| Ni | ND | ND | ND | ND | 0.05 | ND | 1.24 |
| Pb | ND | ND | ND | ND | ND | ND | ND |
| Sr | ND | 0.24 | ND | 1.15 | 0.95 | 0.01 | 1.03 |
| Zn | 0.01 | 2.79 | 0.32 | ND | 9.88 | 12.96 | ND |
| F | ND | ND | 2.48 | 0.05 | ND | ND | ND |
| Cl | 2.38 | 2.89 | ND | 1.48 | 4.96 | 9.48 | 1.35 |
| NO2 | ND | ND | ND | ND | ND | ND | ND |
| Br | ND | ND | ND | ND | ND | ND | ND |
| NO3 | 15.48 | 5.82 | 12.41 | 0.33 | 18.85 | 24.43 | 2.47 |
| PO4 | ND | ND | 1.59 | 0.49 | ND | ND | ND |
| SO4 | 438.76 | 190.41 | 431.78 | 429.96 | 1,314.69 | 936.37 | 470.78 |
ND, not detected.