Literature DB >> 25382863

ESTIMATING BACTERIAL DIVERSITY IN SCIRTOTHRIPS DORSALIS (THYSANOPTERA: THRIPIDAE) VIA NEXT GENERATION SEQUENCING.

Aaron M Dickey1, Andrew J Trease2, Antonella Jara-Cavieres3, Vivek Kumar1, Matthew K Christenson2, Lakshmi-Prasad Potluri2, J Kent Morgan4, Robert G Shatters4, Cindy L Mckenzie4, Paul H Davis2, Lance S Osborne1.   

Abstract

The last 2 decades have produced a better understanding of insect-microbial associations and yielded some important opportunities for insect control. However, most of our knowledge comes from model systems. Thrips (Thysanoptera: Thripidae) have been understudied despite their global importance as invasive species, plant pests and disease vectors. Using a culture and primer independent next-generation sequencing and metagenomics pipeline, we surveyed the bacteria of the globally important pest, Scirtothrips dorsalis Hood. The most abundant bacterial phyla identified were Actinobacteria and Proteobacteria and the most abundant genera were Propionibacterium, Stenotrophomonas, and Pseudomonas. A total of 189 genera of bacteria were identified. The absence of any vertically transferred symbiont taxa commonly found in insects is consistent with other studies suggesting that thrips primarilly acquire resident microbes from their environment. This does not preclude a possible beneficial/intimate association between S. dorsalis and the dominant taxa identified and future work should determine the nature of these associations.

Entities:  

Keywords:  Metagenomics; Next Generation Sequencing; chilli thrips

Year:  2014        PMID: 25382863      PMCID: PMC4222051          DOI: 10.1653/024.097.0204

Source DB:  PubMed          Journal:  Fla Entomol        ISSN: 0015-4040            Impact factor:   1.425


  22 in total

1.  Diet-dependent effects of gut bacteria on their insect host: the symbiosis of Erwinia sp. and western flower thrips.

Authors:  Egbert J de Vries; Gerrit Jacobs; Maurice W Sabelis; Steph B J Menken; Johannes A J Breeuwer
Journal:  Proc Biol Sci       Date:  2004-10-22       Impact factor: 5.349

2.  Integrative analysis of environmental sequences using MEGAN4.

Authors:  Daniel H Huson; Suparna Mitra; Hans-Joachim Ruscheweyh; Nico Weber; Stephan C Schuster
Journal:  Genome Res       Date:  2011-06-20       Impact factor: 9.043

3.  Coverage evaluation of universal bacterial primers using the metagenomic datasets.

Authors:  Dan-Ping Mao; Quan Zhou; Chong-Yu Chen; Zhe-Xue Quan
Journal:  BMC Microbiol       Date:  2012-05-03       Impact factor: 3.605

4.  Onion thrips, Thrips tabaci, have gut bacteria that are closely related to the symbionts of the western flower thrips, Frankliniella occidentalis.

Authors:  Egbert J de Vries; André W G van der Wurff; Gerrit Jacobs; Johannes A J Breeuwer
Journal:  J Insect Sci       Date:  2008       Impact factor: 1.857

5.  Analysis of the gut microbiota of walking sticks (Phasmatodea).

Authors:  Matan Shelomi; Wen-Sui Lo; Lynn S Kimsey; Chih-Horng Kuo
Journal:  BMC Res Notes       Date:  2013-09-11

Review 6.  Arthropods and inherited bacteria: from counting the symbionts to understanding how symbionts count.

Authors:  Olivier Duron; Gregory Dd Hurst
Journal:  BMC Biol       Date:  2013-04-15       Impact factor: 7.431

7.  A cross-taxon analysis of insect-associated bacterial diversity.

Authors:  Ryan Thomas Jones; Leticia Gonzales Sanchez; Noah Fierer
Journal:  PLoS One       Date:  2013-04-16       Impact factor: 3.240

8.  The SILVA ribosomal RNA gene database project: improved data processing and web-based tools.

Authors:  Christian Quast; Elmar Pruesse; Pelin Yilmaz; Jan Gerken; Timmy Schweer; Pablo Yarza; Jörg Peplies; Frank Oliver Glöckner
Journal:  Nucleic Acids Res       Date:  2012-11-28       Impact factor: 16.971

Review 9.  Diversity and function of bacterial microbiota in the mosquito holobiont.

Authors:  Guillaume Minard; Patrick Mavingui; Claire Valiente Moro
Journal:  Parasit Vectors       Date:  2013-05-20       Impact factor: 3.876

10.  The diversity of reproductive parasites among arthropods: Wolbachia do not walk alone.

Authors:  Olivier Duron; Didier Bouchon; Sébastien Boutin; Lawrence Bellamy; Liqin Zhou; Jan Engelstädter; Gregory D Hurst
Journal:  BMC Biol       Date:  2008-06-24       Impact factor: 7.431

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  8 in total

1.  A novel mitochondrial genome architecture in thrips (Insecta: Thysanoptera): extreme size asymmetry among chromosomes and possible recent control region duplication.

Authors:  Aaron M Dickey; Vivek Kumar; J Kent Morgan; Antonella Jara-Cavieres; Robert G Shatters; Cindy L McKenzie; Lance S Osborne
Journal:  BMC Genomics       Date:  2015-06-09       Impact factor: 3.969

2.  The Scirtothrips dorsalis Species Complex: Endemism and Invasion in a Global Pest.

Authors:  Aaron M Dickey; Vivek Kumar; Mark S Hoddle; Joe E Funderburk; J Kent Morgan; Antonella Jara-Cavieres; Robert G Shatters; Lance S Osborne; Cindy L McKenzie
Journal:  PLoS One       Date:  2015-04-20       Impact factor: 3.240

3.  Genome Sequence of Stenotrophomonas maltophilia Strain SmAs1, Isolated From the Asian Malaria Mosquito Anopheles stephensi.

Authors:  Grant L Hughes; Juan Antonio Raygoza Garay; Vikas Koundal; Jason L Rasgon; Michael M Mwangi
Journal:  Genome Announc       Date:  2016-03-10

4.  Microbiome profiling of the onion thrips, Thrips tabaci Lindeman (Thysanoptera: Thripidae).

Authors:  Suresh J Gawande; Sivalingam Anandhan; Ashish Ingle; Praveen Roylawar; Kiran Khandagale; Tushar Gawai; Alana Jacobson; Ramasamy Asokan; Major Singh
Journal:  PLoS One       Date:  2019-09-30       Impact factor: 3.240

5.  Gut microbial composition in developmental stages of gall inducing thrips Gynaikothrips uzeli and associated plant pathogenesis.

Authors:  Kaomud Tyagi; Inderjeet Tyagi; Abhishek Patidar; Devkant Singha; Agnieszka Kaczmarczyk-Ziemba; Dhriti Banerjee; Vikas Kumar
Journal:  Saudi J Biol Sci       Date:  2021-11-24       Impact factor: 4.219

6.  Two New Strains of Wolbachia Affecting Natural Avocado Thrips.

Authors:  Daniela Cano-Calle; Clara I Saldamando-Benjumea; Rafael J Vivero-Gómez; Claudia X Moreno-Herrera; Rafael E Arango-Isaza
Journal:  Indian J Microbiol       Date:  2021-06-04

7.  First insight into microbiome profile of fungivorous thrips Hoplothrips carpathicus (Insecta: Thysanoptera) at different developmental stages: molecular evidence of Wolbachia endosymbiosis.

Authors:  Agnieszka Kaczmarczyk; Halina Kucharczyk; Marek Kucharczyk; Przemysław Kapusta; Jerzy Sell; Sylwia Zielińska
Journal:  Sci Rep       Date:  2018-09-26       Impact factor: 4.379

8.  Integrative Insight into Relationships between Florivorous Thrips Haplothrips leucanthemi and H. niger (Insecta, Thysanoptera).

Authors:  Agnieszka Kaczmarczyk-Ziemba; Halina Kucharczyk; Marek Kucharczyk; Kinga Kucharska
Journal:  Insects       Date:  2022-03-11       Impact factor: 2.769

  8 in total

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