Literature DB >> 25380719

454 Pyrosequencing reveals diversity of Bdellovibrio and like organisms in fresh and salt water.

Nan Li1, Henry N Williams.   

Abstract

Bdellovibrio-and-like organisms (BALOs) are Gram-negative, predatory bacteria that inhabit terrestrial, freshwater and saltwater environments. They have been detected primarily by culture-dependent methods which have limitations. In this study, diversity and community structure of BALOs in freshwater and saltwater samples were characterized by 16S rRNA gene pyrosequencing with specific BALO group primers. Novel Bacteriovorax 16S rDNA sequences were found both in saltwater enrichment cultures and in situ environmental samples, but no new operational taxonomic units were detected in the freshwater samples. The results revealed unexpected diversity of BALOs and advance understanding of the similarities and differences between Bdellovibrio and Bacteriovorax diversity and distribution in the environment.

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Year:  2014        PMID: 25380719      PMCID: PMC4492430          DOI: 10.1007/s10482-014-0327-9

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  21 in total

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Authors:  Daniel H Huson; Celine Scornavacca
Journal:  Syst Biol       Date:  2012-07-10       Impact factor: 15.683

2.  Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

Authors:  Anthony S Amend; Keith A Seifert; Thomas D Bruns
Journal:  Mol Ecol       Date:  2010-11-03       Impact factor: 6.185

3.  Structure analysis of a soil community of predatory bacteria using culture-dependent and culture-independent methods reveals a hitherto undetected diversity of Bdellovibrio-and-like organisms.

Authors:  Yaacov Davidov; Avital Friedjung; Edouard Jurkevitch
Journal:  Environ Microbiol       Date:  2006-09       Impact factor: 5.491

Review 4.  Predation between prokaryotes and the origin of eukaryotes.

Authors:  Yaacov Davidov; Edouard Jurkevitch
Journal:  Bioessays       Date:  2009-07       Impact factor: 4.345

5.  Global survey of diversity among environmental saltwater Bacteriovoracaceae.

Authors:  Silvia A Pineiro; O Colin Stine; Ashvini Chauhan; Susan R Steyert; Richard Smith; Henry N Williams
Journal:  Environ Microbiol       Date:  2007-10       Impact factor: 5.491

6.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

7.  Assessing and improving methods used in operational taxonomic unit-based approaches for 16S rRNA gene sequence analysis.

Authors:  Patrick D Schloss; Sarah L Westcott
Journal:  Appl Environ Microbiol       Date:  2011-03-18       Impact factor: 4.792

8.  Isolation, enumeration, and host range of marine Bdellovibrios.

Authors:  V I Taylor; P Baumann; J L Reichelt; R D Allen
Journal:  Arch Microbiol       Date:  1974-07-04       Impact factor: 2.552

9.  Pyrosequencing reveals a highly diverse and cultivar-specific bacterial endophyte community in potato roots.

Authors:  Daniel K Manter; Jorge A Delgado; David G Holm; Rachel A Stong
Journal:  Microb Ecol       Date:  2010-04-23       Impact factor: 4.552

10.  Diversity and evolution of Bdellovibrio-and-like organisms (BALOs), reclassification of Bacteriovorax starrii as Peredibacter starrii gen. nov., comb. nov., and description of the Bacteriovorax-Peredibacter clade as Bacteriovoracaceae fam. nov.

Authors:  Yaacov Davidov; Edouard Jurkevitch
Journal:  Int J Syst Evol Microbiol       Date:  2004-09       Impact factor: 2.747

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  6 in total

Review 1.  Microbial Surface Colonization and Biofilm Development in Marine Environments.

Authors:  Hongyue Dang; Charles R Lovell
Journal:  Microbiol Mol Biol Rev       Date:  2015-12-23       Impact factor: 11.056

Review 2.  Compounds affecting predation by and viability of predatory bacteria.

Authors:  Robert J Mitchell; Wonsik Mun; Sandrine Soh Mabekou; Hyochan Jang; Seong Yeol Choi
Journal:  Appl Microbiol Biotechnol       Date:  2020-03-14       Impact factor: 4.813

3.  Bacterial predation transforms the landscape and community assembly of biofilms.

Authors:  Benjamin R Wucher; Mennat Elsayed; James S Adelman; Daniel E Kadouri; Carey D Nadell
Journal:  Curr Biol       Date:  2021-04-06       Impact factor: 10.900

4.  Spatiotemporal analysis of microbial community dynamics during seasonal stratification events in a freshwater lake (Grand Lake, OK, USA).

Authors:  Jessica M Morrison; Kristina D Baker; Richard M Zamor; Steve Nikolai; Mostafa S Elshahed; Noha H Youssef
Journal:  PLoS One       Date:  2017-05-11       Impact factor: 3.240

5.  The Saltpan Microbiome is Structured by Sediment Depth and Minimally Influenced by Variable Hydration.

Authors:  Eric A Weingarten; Lauren A Lawson; Colin R Jackson
Journal:  Microorganisms       Date:  2020-04-08

6.  Age-Related Shifts in Bacterial Diversity in a Reef Coral.

Authors:  Alex D Williams; Barbara E Brown; Lalita Putchim; Michael J Sweet
Journal:  PLoS One       Date:  2015-12-23       Impact factor: 3.240

  6 in total

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