| Literature DB >> 25379363 |
Sae Yanagihara1, Hiroaki Goto1, Tatsuhiko Hirota1, Shinji Fukuda2, Hiroshi Ohno3, Naoyuki Yamamoto4.
Abstract
To understand the immunomodulatory effects of Lactobacillus acidophilus L-92 cells suggested from our previous study of in vivo anti-allergy and anti-virus effects, host immune responses in macrophage-like THP-1 cells after 4 h (the early phase) and 24 h (the late phase) of cocultivation with L-92 cells were investigated by transcriptome analysis. In the early phase of L-92 treatment, various transcription regulator genes, such as, NFkB1, NFkB2, JUN, HIVEP2 and RELB, and genes encoding chemokines and cytokines, such as CCL4, CXCL11, CCL3 and TNF, were upregulated. Two transmembrane receptor genes, TLR7 and ICAM1, were also upregulated in the early phase of treatment. In contrast, many transmembrane receptor genes, such as IL7R, CD80, CRLF2, CD86, CD5, HLA-DQA1, IL2RA, IL15RA and CSF2RA, and some cytokine genes, including IL6, IL23A and CCL22, were significantly upregulated in the late phase after L-92 exposure. Some genes encoding cytokines, such as IL1A, IL1B and IL8, and the enzyme IDO1 were upregulated at both the early and the late phases of treatment. These results suggest that probiotic L-92 might promote Th1 and regulatory T-cell responses by activation of the MAPK signaling pathway, followed by the NOD-like receptor signaling pathway in THP-1 cells.Entities:
Keywords: Lactobacillus acidophilus L-92; THP-1; cytokine; transcription regulator; transcriptome analysis
Year: 2014 PMID: 25379363 PMCID: PMC4219982 DOI: 10.12938/bmfh.33.157
Source DB: PubMed Journal: Biosci Microbiota Food Health ISSN: 2186-3342
Ingenuity pathway analysis for altered gene expression in THP-1 cells treated with heat-killed Lactobacillus acidophilus L-92 cells
| Category | 4 hr | 24 hr |
| Transcription regulator | 19 | 53 |
| Enzyme | 5 | 31 |
| Transmembrane receptor | 7 | 28 |
| Cytokine | 14 | 24 |
| Kinase | 4 | 22 |
| G-protein coupled receptor | 2 | 10 |
| Phosphatase | 2 | 7 |
| Growth factor | 1 | 5 |
| Peptidase | 0 | 4 |
| Ion channel | 0 | 3 |
| Ligand-dependent nuclear receptor | 0 | 3 |
| Transporter | 0 | 1 |
| Other | 12 | 62 |
| 66 | 253 |
Major altered genes categorized as transcription regulators, enzymes, transmembrane receptors and cytokines in THP-1 cells after L-92 treatment for 4 hr and 24 hr
| Category | Entrez Gene Name | Symbol | Fold change | |
| 0–4 hr | 4–24 hr | |||
| Early responding genes | > 4.0 | 4.0 > | ||
| Cytokine | ||||
| chemokine (C-C motif) ligand 4 | 58.29 | 2.02 | ||
| chemokine (C-X-C motif) ligand 11 | 27.97 | 2.28 | ||
| chemokine (C-C motif) ligand 3 | 20.04 | 2.77 | ||
| tumor necrosis factor | 14.57 | 1.15 | ||
| interleukin 1 receptor antagonist | 5.11 | 1.95 | ||
| Transmembrane receptor | ||||
| intercellular adhesion molecule 1 | 10.01 | 2.33 | ||
| toll-like receptor 7 | 6.63 | 0.32 | ||
| Enzyme | ||||
| superoxide dismutase 2, mitochondrial | 10.04 | 2.50 | ||
| heme oxygenase (decycling) 1 | 4.26 | 2.21 | ||
| Transcription regulator | ||||
| jun proto-oncogene | 4.99 | 2.72 | ||
| nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 | 5.18 | 2.21 | ||
| nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100) | 6.10 | 1.85 | ||
| human immunodeficiency virus type I enhancer binding protein 2 | 4.18 | 2.29 | ||
| v-rel reticuloendotheliosis viral oncogene homolog B | 4.34 | 1.04 | ||
| Slowly responding genes | 0–4 hr | 4–24 hr | ||
| Transmembrane receptor | 4.0 > | > 4.0 | ||
| interleukin 7 receptor | 1.83 | 63.99 | ||
| CD80 molecule | 1.74 | 61.40 | ||
| cytokine receptor-like factor 2 | 2.02 | 52.00 | ||
| CD86 molecule | 0.86 | 30.10 | ||
| CD5 molecule | 1.10 | 16.20 | ||
| interleukin 15 receptor, alpha | 2.06 | 4.37 | ||
| major histocompatibility complex, class II, DQ alpha 1 | 0.94 | 5.93 | ||
| interleukin 2 receptor, alpha | 1.00 | 4.98 | ||
| colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage) | 0.85 | 4.15 | ||
| Cytokine | ||||
| interleukin 12B (natural killer cell stimulatory factor 2, p40) | 3.39 | 18.10 | ||
| interleukin 6 (interferon, beta 2) | 1.08 | 54.45 | ||
| interleukin 23, alpha subunit p19 | 1.29 | 28.01 | ||
| secreted phosphoprotein 1 | 2.73 | 11.06 | ||
| chemokine (C-C motif) ligand 22 | 1.07 | 17.16 | ||
| chemokine (C-C motif) ligand 19 | 1.13 | 9.65 | ||
| Transcription regulator | ||||
| early B-cell factor 1 | 1.12 | 41.89 | ||
| signal transducer and activator of transcription 4 | 1.42 | 23.28 | ||
| runt-related transcription factor 1; translocated to, 1 (cyclin D-related) | 0.97 | 8.18 | ||
| zinc finger protein, multitype 2 | 1.05 | 5.65 | ||
| B-cell CLL/lymphoma 11A (zinc finger protein) | 0.85 | 6.92 | ||
| growth factor independent 1 transcription repressor | –2.21 | –5.00 | ||
| Enzyme | ||||
| prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) | 2.58 | 14.29 | ||
| adenosine deaminase | 1.07 | 9.62 | ||
| sphingosine-1-phosphate lyase 1 | 1.06 | 5.90 | ||
| 3’-phosphoadenosine 5’-phosphosulfate synthase 2 | 1.05 | 5.47 | ||
| fibronectin 1 | 0.95 | 5.84 | ||
| coagulation factor XIII, A1 polypeptide | –1.33 | –12.62 | ||
| Constitutively responding genes | 0–4 hr | 4–24 hr | ||
| Cytokine | > 4.0 | > 4.0 | ||
| interleukin 1, beta | 26.00 | 4.09 | ||
| interleukin 8 | 16.28 | 4.84 | ||
| interleukin 1, alpha | 4.32 | 16.48 | ||
| Epstein-Barr virus induced 3 | 6.64 | 7.44 | ||
| Enzyme | ||||
| indoleamine 2,3-dioxygenase 1 | 5.67 | 30.67 | ||
Early responding genes were those altered at 4 hr; slowly responding genes were those altered at 24 hr.
Fig. 1.Changes in gene expressions from 0 to 4 hr (black bar) and 4 to 24 hr (white bar) observed in THP-1 cells after treatment with L-92 cells as shown by qRT-PCR analysis. The dotted line represents a 4-fold change in expression. The mean ± SD levels of expression of differentially expressed genes and statistical significance of each gene’s expression between 0 and 4 hr (black) and 4 and 24 hr (white) are shown. *p<0.05; **p<0.01 (determined by Student’s t-test).
Fig. 2.Changes in gene expression in THP-1 cells after 4 hr of treatment with Lactobacillus acidophilus L-92 cells. Genes that were significantly upregulated by L-92 treatment were categorized by the IPA method as described in the Materials and Methods. Upregulated genes are indicated by red arrows. Black thin arrows represent the predicted flow of the pathway. Genes grouped by KEGG analysis are indicated by the red dotted line.
Fig. 3.Changes in gene expression in THP-1 cells after 24 hr of treatment with Lactobacillus acidophilus L-92 cells. Genes that were significantly upregulated genes by L-92 treatment were categorized by the IPA method as described in the Materials and Methods. Upregulated genes are indicated by red arrows. Black thin arrows represent the predicted flow of the pathway. Genes grouped by KEGG analysis are indicated by the red dotted line.