Literature DB >> 25374389

Conformation and dynamics of 8-Arg-vasopressin in solution.

Elke Haensele1, Lee Banting, David C Whitley, Timothy Clark.   

Abstract

Arginine-vasopressin was subjected to a long (11 μs) molecular dynamics simulation in aqueous solution. Analysis of the results by DASH and principal components analyses revealed four main ring conformations that move essentially independently of the faster-moving tail region. Two of these conformations (labeled "saddle") feature well-defined β-turns in the ring and conserved transannular hydrogen bonds, whereas the other two ("open") feature neither. The conformations have been identified and defined and are all of sufficient stability to be considered candidates for biological conformations in their cognate receptors.

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Year:  2014        PMID: 25374389     DOI: 10.1007/s00894-014-2485-0

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  38 in total

1.  Structures of an unliganded neurophysin and its vasopressin complex: implications for binding and allosteric mechanisms.

Authors:  C K Wu; B Hu; J P Rose; Z J Liu; T L Nguyen; C Zheng; E Breslow; B C Wang
Journal:  Protein Sci       Date:  2001-09       Impact factor: 6.725

2.  Clustering Molecular Dynamics Trajectories: 1. Characterizing the Performance of Different Clustering Algorithms.

Authors:  Jianyin Shao; Stephen W Tanner; Nephi Thompson; Thomas E Cheatham
Journal:  J Chem Theory Comput       Date:  2007-11       Impact factor: 6.006

3.  Comparison of multiple Amber force fields and development of improved protein backbone parameters.

Authors:  Viktor Hornak; Robert Abel; Asim Okur; Bentley Strockbine; Adrian Roitberg; Carlos Simmerling
Journal:  Proteins       Date:  2006-11-15

Review 4.  Allostery and cooperativity revisited.

Authors:  Qiang Cui; Martin Karplus
Journal:  Protein Sci       Date:  2008-06-17       Impact factor: 6.725

Review 5.  In search of the 'bio-active conformation'--is it induced by the target cell membrane?

Authors:  R Schwyzer
Journal:  J Mol Recognit       Date:  1995 Jan-Apr       Impact factor: 2.137

Review 6.  The anatomy and taxonomy of protein structure.

Authors:  J S Richardson
Journal:  Adv Protein Chem       Date:  1981

7.  Conformational studies of vasopressin and mesotocin using NMR spectroscopy and molecular modelling methods. Part II: Studies in the SDS micelle.

Authors:  Sylwia Rodziewicz-Motowidło; Emilia Sikorska; Marta Oleszczuk; Cezary Czaplewski
Journal:  J Pept Sci       Date:  2008-01       Impact factor: 1.905

Review 8.  Oxytocin, vasopressin, and autism: is there a connection?

Authors:  T R Insel; D J O'Brien; J F Leckman
Journal:  Biol Psychiatry       Date:  1999-01-15       Impact factor: 13.382

Review 9.  Central arginine vasopressin and endogenous antipyresis.

Authors:  Q J Pittman; M F Wilkinson
Journal:  Can J Physiol Pharmacol       Date:  1992-05       Impact factor: 2.273

10.  Modulation of insulin and glucagon secretion from the perfused rat pancreas by the neurohypophysial hormones and by desamino-D-arginine vasopressin (DDAVP).

Authors:  B E Dunning; J H Moltz; C P Fawcett
Journal:  Peptides       Date:  1984 Sep-Oct       Impact factor: 3.750

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  2 in total

Review 1.  Elucidating Solution Structures of Cyclic Peptides Using Molecular Dynamics Simulations.

Authors:  Jovan Damjanovic; Jiayuan Miao; He Huang; Yu-Shan Lin
Journal:  Chem Rev       Date:  2021-01-11       Impact factor: 60.622

2.  Structure prediction of cyclic peptides by molecular dynamics + machine learning.

Authors:  Jiayuan Miao; Marc L Descoteaux; Yu-Shan Lin
Journal:  Chem Sci       Date:  2021-11-05       Impact factor: 9.969

  2 in total

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