Literature DB >> 25373762

SNP genotyping using KASPar assays.

Scott M Smith1, Peter J Maughan.   

Abstract

In a separate chapter we describe a simple method for single nucleotide polymorphism (SNP) discovery using genomic reduction. Here we describe a scalable and cost-effective SNP genotyping method based on KBioscience's competitive allele-specific PCR amplification of target sequences and endpoint fluorescence genotyping (KASPar™) using a FRET capable plate reader or Fluidigm's dynamic array high-throughput platform.

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Substances:

Year:  2015        PMID: 25373762     DOI: 10.1007/978-1-4939-1966-6_18

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  20 in total

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Authors:  Anke Konrad; Owen Thompson; Robert H Waterston; Donald G Moerman; Peter D Keightley; Ulfar Bergthorsson; Vaishali Katju
Journal:  Mol Biol Evol       Date:  2017-06-01       Impact factor: 16.240

2.  Rapid identification of causal mutations in tomato EMS populations via mapping-by-sequencing.

Authors:  Virginie Garcia; Cécile Bres; Daniel Just; Lucie Fernandez; Fabienne Wong Jun Tai; Jean-Philippe Mauxion; Marie-Christine Le Paslier; Aurélie Bérard; Dominique Brunel; Koh Aoki; Saleh Alseekh; Alisdair R Fernie; Paul D Fraser; Christophe Rothan
Journal:  Nat Protoc       Date:  2016-11-03       Impact factor: 13.491

3.  A Specific Gibberellin 20-Oxidase Dictates the Flowering-Runnering Decision in Diploid Strawberry.

Authors:  Tracey Tenreira; Maria João Pimenta Lange; Theo Lange; Cécile Bres; Marc Labadie; Amparo Monfort; Michel Hernould; Christophe Rothan; Béatrice Denoyes
Journal:  Plant Cell       Date:  2017-09-05       Impact factor: 11.277

4.  Haplotype Analysis of the Pre-harvest Sprouting Resistance Locus Phs-A1 Reveals a Causal Role of TaMKK3-A in Global Germplasm.

Authors:  Oluwaseyi Shorinola; Barbara Balcárková; Jessica Hyles; Josquin F G Tibbits; Matthew J Hayden; Katarina Holušova; Miroslav Valárik; Assaf Distelfeld; Atsushi Torada; Jose M Barrero; Cristobal Uauy
Journal:  Front Plant Sci       Date:  2017-09-13       Impact factor: 5.753

5.  The Tomato Guanylate-Binding Protein SlGBP1 Enables Fruit Tissue Differentiation by Maintaining Endopolyploid Cells in a Non-Proliferative State.

Authors:  Constance Musseau; Joana Jorly; Stéphanie Gadin; Iben Sørensen; Catherine Deborde; Stéphane Bernillon; Jean-Philippe Mauxion; Isabelle Atienza; Annick Moing; Martine Lemaire-Chamley; Jocelyn K C Rose; Christian Chevalier; Christophe Rothan; Lucie Fernandez-Lochu; Frédéric Gévaudant
Journal:  Plant Cell       Date:  2020-08-04       Impact factor: 11.277

6.  The Glycerol-3-Phosphate Acyltransferase GPAT6 from Tomato Plays a Central Role in Fruit Cutin Biosynthesis.

Authors:  Johann Petit; Cécile Bres; Jean-Philippe Mauxion; Fabienne Wong Jun Tai; Laetitia B B Martin; Eric A Fich; Jérôme Joubès; Jocelyn K C Rose; Frédéric Domergue; Christophe Rothan
Journal:  Plant Physiol       Date:  2016-04-19       Impact factor: 8.340

7.  Systems biology derived source-sink mechanism of BMP gradient formation.

Authors:  Joseph Zinski; Ye Bu; Xu Wang; Wei Dou; David Umulis; Mary C Mullins
Journal:  Elife       Date:  2017-08-09       Impact factor: 8.140

8.  Replication of SNP associations with keratoconus in a Czech cohort.

Authors:  Petra Liskova; Lubica Dudakova; Anna Krepelova; Jiri Klema; Pirro G Hysi
Journal:  PLoS One       Date:  2017-02-16       Impact factor: 3.240

9.  Microtubule-actin crosslinking factor 1 (Macf1) domain function in Balbiani body dissociation and nuclear positioning.

Authors:  Matias Escobar-Aguirre; Hong Zhang; Allison Jamieson-Lucy; Mary C Mullins
Journal:  PLoS Genet       Date:  2017-09-07       Impact factor: 5.917

10.  The wheat Phs-A1 pre-harvest sprouting resistance locus delays the rate of seed dormancy loss and maps 0.3 cM distal to the PM19 genes in UK germplasm.

Authors:  Oluwaseyi Shorinola; Nicholas Bird; James Simmonds; Simon Berry; Tina Henriksson; Peter Jack; Peter Werner; Tanja Gerjets; Duncan Scholefield; Barbara Balcárková; Miroslav Valárik; M J Holdsworth; John Flintham; Cristobal Uauy
Journal:  J Exp Bot       Date:  2016-05-23       Impact factor: 6.992

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