Literature DB >> 25372828

Use of a novel microtitration protocol to obtain diffraction-quality crystals of 4-hydroxy-2-oxoglutarate aldolase from Bos taurus.

Amadeus Huang1, Edward Baker1, Kerry Loomes1.   

Abstract

The enzyme 4-hydroxy-2-oxoglutarate aldolase (HOGA) catalyses the retro-aldol degradation of 4-hydroxy-2-oxoglutarate to pyruvate and glyoxylate as part of the hydroxyproline catabolic pathway in mammals. Mutations in the coding region of the human HOGA gene are associated with primary hyperoxaluria type 3, a disease characterized by excessive oxalate production and ultimately stone deposition. Native HOGA was purified from bovine kidney using an improved and streamlined purification protocol from which two crystal forms were obtained using two different approaches. Vapour diffusion using PEG 3350 as a precipitant produced monoclinic crystals that belonged to space group C2 and diffracted to 3.5 Å resolution. By comparison, orthorhombic crystals belonging to space group I222 or I2₁2₁2₁ and diffracting to beyond 2.25 Å resolution were obtained using a novel microtitration protocol with ammonium sulfate. The latter crystal form displayed superior diffraction quality and was suitable for structural determination by X-ray crystallography.

Entities:  

Keywords:  4-hydroxy-2-oxoglutarate aldolase; Bos taurus; DHDPSL; primary hyperoxaluria

Mesh:

Substances:

Year:  2014        PMID: 25372828      PMCID: PMC4231863          DOI: 10.1107/S2053230X14021463

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  20 in total

1.  Crystal structure and kinetic study of dihydrodipicolinate synthase from Mycobacterium tuberculosis.

Authors:  Georgia Kefala; Genevieve L Evans; Michael D W Griffin; Sean R A Devenish; F Grant Pearce; Matthew A Perugini; Juliet A Gerrard; Manfred S Weiss; Renwick C J Dobson
Journal:  Biochem J       Date:  2008-04-15       Impact factor: 3.857

2.  Variant properties of bovine liver 2-keto-4-hydroxyglutarate aldolase; its -decarboxylase activity, lack of substrate stereospecificity, and structural requirements for binding substrate analogs.

Authors:  R D Kobes; E E Dekker
Journal:  Biochim Biophys Acta       Date:  1971-10

3.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

4.  Preliminary crystallographic studies of an extremely thermostable KDG aldolase from Sulfolobus solfataricus.

Authors:  E J Hendry; C L Buchanan; R J Russell; D W Hough; C D Reeve; M J Danson; G L Taylor
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2000-11

5.  Control of oxalate formation from L-hydroxyproline in liver mitochondria.

Authors:  Tatsuya Takayama; Kimio Fujita; Kazuo Suzuki; Michiko Sakaguchi; Michio Fujie; Erina Nagai; Shinya Watanabe; Arata Ichiyama; Yoshihide Ogawa
Journal:  J Am Soc Nephrol       Date:  2003-04       Impact factor: 10.121

6.  Structure of recombinant mouse collagenase-3 (MMP-13).

Authors:  I Botos; E Meyer; S M Swanson; V Lemaître; Y Eeckhout; E F Meyer
Journal:  J Mol Biol       Date:  1999-10-01       Impact factor: 5.469

7.  Mutations in DHDPSL are responsible for primary hyperoxaluria type III.

Authors:  Ruth Belostotsky; Eric Seboun; Gregory H Idelson; Dawn S Milliner; Rachel Becker-Cohen; Choni Rinat; Carla G Monico; Sofia Feinstein; Efrat Ben-Shalom; Daniella Magen; Irith Weissman; Celine Charon; Yaacov Frishberg
Journal:  Am J Hum Genet       Date:  2010-09-10       Impact factor: 11.025

8.  Primary hyperoxaluria type III gene HOGA1 (formerly DHDPSL) as a possible risk factor for idiopathic calcium oxalate urolithiasis.

Authors:  Carla G Monico; Sandro Rossetti; Ruth Belostotsky; Andrea G Cogal; Regina M Herges; Barbara M Seide; Julie B Olson; Eric J Bergstrahl; Hugh J Williams; William E Haley; Yaacov Frishberg; Dawn S Milliner
Journal:  Clin J Am Soc Nephrol       Date:  2011-09       Impact factor: 8.237

9.  An introduction to data reduction: space-group determination, scaling and intensity statistics.

Authors:  Philip R Evans
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Structural and biochemical studies of human 4-hydroxy-2-oxoglutarate aldolase: implications for hydroxyproline metabolism in primary hyperoxaluria.

Authors:  Travis J Riedel; Lynnette C Johnson; John Knight; Roy R Hantgan; Ross P Holmes; W Todd Lowther
Journal:  PLoS One       Date:  2011-10-06       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.