Literature DB >> 25369988

Complementarity of statistical treatments to reconstruct worldwide routes of invasion: the case of the Asian ladybird Harmonia axyridis.

Eric Lombaert1, Thomas Guillemaud, Jonathan Lundgren, Robert Koch, Benoît Facon, Audrey Grez, Antoon Loomans, Thibaut Malausa, Oldrich Nedved, Emma Rhule, Arnstein Staverlokk, Tove Steenberg, Arnaud Estoup.   

Abstract

Inferences about introduction histories of invasive species remain challenging because of the stochastic demographic processes involved. Approximate Bayesian computation (ABC) can help to overcome these problems, but such method requires a prior understanding of population structure over the study area, necessitating the use of alternative methods and an intense sampling design. In this study, we made inferences about the worldwide invasion history of the ladybird Harmonia axyridis by various population genetics statistical methods, using a large set of sampling sites distributed over most of the species' native and invaded areas. We evaluated the complementarity of the statistical methods and the consequences of using different sets of site samples for ABC inferences. We found that the H. axyridis invasion has involved two bridgehead invasive populations in North America, which have served as the source populations for at least six independent introductions into other continents. We also identified several situations of genetic admixture between differentiated sources. Our results highlight the importance of coupling ABC methods with more traditional statistical approaches. We found that the choice of site samples could affect the conclusions of ABC analyses comparing possible scenarios. Approaches involving independent ABC analyses on several sample sets constitute a sensible solution, complementary to standard quality controls based on the analysis of pseudo-observed data sets, to minimize erroneous conclusions. This study provides biologists without expertise in this area with detailed methodological and conceptual guidelines for making inferences about invasion routes when dealing with a large number of sampling sites and complex population genetic structures.
© 2014 John Wiley & Sons Ltd.

Entities:  

Keywords:  approximate Bayesian computation; biological invasion; harlequin ladybird; invasion routes; microsatellite

Mesh:

Year:  2014        PMID: 25369988     DOI: 10.1111/mec.12989

Source DB:  PubMed          Journal:  Mol Ecol        ISSN: 0962-1083            Impact factor:   6.185


  19 in total

1.  Biases of STRUCTURE software when exploring introduction routes of invasive species.

Authors:  Eric Lombaert; Thomas Guillemaud; Emeline Deleury
Journal:  Heredity (Edinb)       Date:  2018-01-17       Impact factor: 3.821

2.  Extraordinarily rapid speciation in a marine fish.

Authors:  Paolo Momigliano; Henri Jokinen; Antoine Fraimout; Ann-Britt Florin; Alf Norkko; Juha Merilä
Journal:  Proc Natl Acad Sci U S A       Date:  2017-05-22       Impact factor: 11.205

3.  Genetic structure and invasion history of the house mouse (Mus musculus domesticus) in Senegal, West Africa: a legacy of colonial and contemporary times.

Authors:  C Lippens; A Estoup; M K Hima; A Loiseau; C Tatard; A Dalecky; K Bâ; M Kane; M Diallo; A Sow; Y Niang; S Piry; K Berthier; R Leblois; J-M Duplantier; C Brouat
Journal:  Heredity (Edinb)       Date:  2017-03-29       Impact factor: 3.821

4.  Population genomic analyses reveal a history of range expansion and trait evolution across the native and invaded range of yellow starthistle (Centaurea solstitialis).

Authors:  Brittany S Barker; Krikor Andonian; Sarah M Swope; Douglas G Luster; Katrina M Dlugosch
Journal:  Mol Ecol       Date:  2017-02-04       Impact factor: 6.185

5.  Global invasion history of the agricultural pest butterfly Pieris rapae revealed with genomics and citizen science.

Authors:  Sean F Ryan; Eric Lombaert; Anne Espeset; Roger Vila; Gerard Talavera; Vlad Dincă; Meredith M Doellman; Mark A Renshaw; Matthew W Eng; Emily A Hornett; Yiyuan Li; Michael E Pfrender; DeWayne Shoemaker
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-10       Impact factor: 11.205

6.  Biological invasion and biological control select for different life histories.

Authors:  Ashraf Tayeh; Ruth A Hufbauer; Arnaud Estoup; Virginie Ravigné; Léa Frachon; Benoit Facon
Journal:  Nat Commun       Date:  2015-06-02       Impact factor: 14.919

7.  Patterns of genetic variation among geographic and host-plant associated populations of the peach fruit moth Carposina sasakii (Lepidoptera: Carposinidae).

Authors:  You-Zhu Wang; Bing-Yan Li; Ary Anthony Hoffmann; Li-Jun Cao; Ya-Jun Gong; Wei Song; Jia-Ying Zhu; Shu-Jun Wei
Journal:  BMC Evol Biol       Date:  2017-12-20       Impact factor: 3.260

8.  Deciphering the Routes of invasion of Drosophila suzukii by Means of ABC Random Forest.

Authors:  Antoine Fraimout; Vincent Debat; Simon Fellous; Ruth A Hufbauer; Julien Foucaud; Pierre Pudlo; Jean-Michel Marin; Donald K Price; Julien Cattel; Xiao Chen; Marindia Deprá; Pierre François Duyck; Christelle Guedot; Marc Kenis; Masahito T Kimura; Gregory Loeb; Anne Loiseau; Isabel Martinez-Sañudo; Marta Pascual; Maxi Polihronakis Richmond; Peter Shearer; Nadia Singh; Koichiro Tamura; Anne Xuéreb; Jinping Zhang; Arnaud Estoup
Journal:  Mol Biol Evol       Date:  2017-04-01       Impact factor: 16.240

Review 9.  The evolutionary dynamics of biological invasions: A multi-approach perspective.

Authors:  Stéphanie Sherpa; Laurence Després
Journal:  Evol Appl       Date:  2021-03-30       Impact factor: 5.183

10.  Low levels of genetic differentiation with isolation by geography and environment in populations of Drosophila melanogaster from across China.

Authors:  Lei Yue; Li-Jun Cao; Jin-Cui Chen; Ya-Jun Gong; Yan-Hao Lin; Ary Anthony Hoffmann; Shu-Jun Wei
Journal:  Heredity (Edinb)       Date:  2021-03-08       Impact factor: 3.832

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