| Literature DB >> 25369941 |
Xinyan Wang, Wan Li, Kun Huang, Xiaowen Kang, Zhaoguo Li, Chengcheng Yang, Xiaomei Wu1, Lina Chen.
Abstract
BACKGROUND: Genetic factors play a role in the development and severity of chronic obstructive pulmonary disease (COPD). The pathogenesis of COPD is a multifactorial process including an inflammatory cell profile. Recent studies revealed that single nucleotide polymorphisms (SNPs) within ADAM33 increased the susceptibility to COPD through changing the airway inflammatory process and lung function.Entities:
Mesh:
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Year: 2014 PMID: 25369941 PMCID: PMC4228268 DOI: 10.1186/1471-2466-14-173
Source DB: PubMed Journal: BMC Pulm Med ISSN: 1471-2466 Impact factor: 3.317
The clinical information of patients recruited
| CASE * | CONTROL | |
|---|---|---|
| Number of patients | 312 | 319 |
| Age (years) | 60.5 (7.8) | 61.5 (8.1) |
| Male: Female | 186:126 | 192:127 |
| Pack years of smoking† | 35.46 (15.9) | 32.54 (12.7) |
| FEV1 (% predicted)‡ | 52.5 (8.6) | 91.5 (9.6) |
| FEV1/FVC (%)§ | 47.5 (7.6) | 90.5 (11.6) |
| Postbd FEV1 (% predicted)|| | 58.5 (9.6) | 93.5 (10.5) |
| Postbd FEV1/FVC (%) | 49.2 (8.5) | 91.5 (11.8) |
| TLCO (% predicted)** | 63.09 (18.1) | 93.21 (2.9) |
| GOLD status | ||
| Stage I (mild) | 52 | - |
| Stage II (moderate) | 140 | - |
| Stage III (severe) | 98 | - |
| Stage IV (very severe) | 22 | - |
*Data are means and standard deviations (in parentheses).
†Pack year: (packs per day) × (years smoked).
‡FEV1: forced expiratory volume in first second.
§FVC: forced vital capacity.
||Postbd: post bronchodilator.
**TLCO: transfer factor of the lung for carbon monoxide.
The location of investigated ADAM33 SNPs and primer sequence
| Chromosome Position | Reference SNP ID | SNP Name | Alleles | Primer sequences |
|---|---|---|---|---|
| 3590205 | 2280090 | T2 | A/G | F: 5′-TTCTCAGGGTCTGGGAGAAA-3′ |
| R: 5′-GCCAACCTCCTGGACTCTTA-3′ | ||||
| 3590234 | 2280091 | T1 | A/G | F: 5′-ACTCAAGGTGACTGGGTGCT-3′ |
| R: 5′-GAGGGCATGAGGCTCACTTG-3′ | ||||
| 3591742 | 528557 | S2 | C/G | F: 5′-AGAGCTCTGAGGAGGGGAAC-3′ |
| R: 5′-TGTGCAGGCTGAAAGTATGC-3′ | ||||
| 3592207 | 612709 | Q-1 | A/G | F: 5′-GGATTCAAACGGCAAGGAG-3′ |
| R: 5′-GTTCACCTAGATGGCCAGGA-3′ |
Figure 1Association of ADAM33 SNPs with the inflammatory cells in sputum under a recessive genetic model. A: the percentage of lymphocyte; B: the percentage of macrophage; C: the total cell amount in sputum).
Figure 2Association of ADAM33 SNPs with cytokines in sputum under a recessive genetic model. A: IL-8; B: TNF-A; C: VEGF.
Figure 3Association of ADAM33 SNPs with ppFEV1 under a recessive genetic model.
Figure 4Association of ADAM33 SNPs with ppFEV1/FVC under a recessive genetic model.
Figure 5Association of ADAM33 SNPs with ppTLCO under a recessive genetic model.
Association of haplotypes with COPD in both the crude and the adjusted analysis
| P-value | |||||
|---|---|---|---|---|---|
| T2 | T1 | S2 | Q-1 | Unadjusted | Adjusted * |
| G | G | G | G | 3.734e-011 | 1.1e-013 |
| G | G | C | G | 6.32e-009 | 1.72e-011 |
| A | A | G | A | 3.514e-006 | 3.76e-007 |
| A | A | G | G | 5.16e-006 | 8.81e-007 |
| G | A | G | A | 0.003103 | 0.0016 |
| A | A | C | A | 0.004037 | 0.000244 |
| A | G | G | A | 0.04011 | 0.00803 |
| G | A | C | A | 0.01269 | 0.00398 |
| G | G | C | A | – | 0.00712 |
| G | G | G | A | – | 0.0131 |
| G | A | C | G | – | 0.026 |
| G | A | G | G | – | |
| A | A | C | G | – | |
| A | G | G | G | – | |
| A | G | C | G | – | |
*The analysis adjusted for age, gender and smoking.
Association of haplotypes with inflammatory cells and cytokines in sputum in the adjusted analysis
| P-value | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| T2 | T1 | S2 | Q-1 | Sputum | Neutrophil | Macrophage | Lymphocyte | Eosinophils | TNF-A | VEGF | IL-6 | IL-8 |
| G | A | G | G | 0.00207 | 0.0239 | 7.07e-006 | ||||||
| A | A | C | G | 0.00598 | 0.0322 | |||||||
| A | G | G | G | 0.00823 | ||||||||
| A | G | C | G | 0.0146 | 0.0435 | |||||||
| G | G | C | A | 0.0349 | ||||||||
| G | A | C | G | 0.0338 | ||||||||
| G | A | C | A | 0.00419 | ||||||||
| A | A | G | A | 0.0188 | ||||||||
| G | A | G | A | 0.0361 | ||||||||
Association of haplotypes with pulmonary function in the analysis adjusted for age, gender and smoking
| P-value | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| T2 | T1 | S2 | Q-1 | Percent-predicted FEV1 | FEV1/FVC | Percent-predicted TLCO | Percent-predicted FEV1 | FEV1/FVC | Percent-predicted TLCO |
| Disease | Normal | ||||||||
| G | G | G | G | 0.0247 | – | 1.04e-005 | – | – | – |
| G | G | C | G | – | – | 0.000205 | – | – | – |
| A | A | G | A | – | – | 0.000368 | – | – | – |
| A | A | G | G | 0.00176 | 0.000154 | 1.67e-007 | – | – | – |
| A | A | C | A | – | – | 0.000224 | – | – | – |
| G | A | G | A | – | – | – | 0.005447 | – | – |
| G | G | C | A | 0.000234 | 0.000272 | 1.22e-005 | – | – | – |
| A | G | G | A | – | – | 0.0392 | – | – | – |
| G | G | G | A | 8.68e-005 | 0.00209 | 6.98e-016 | – | – | – |
| G | A | G | G | – | – | 0.00319 | – | – | – |
| A | A | C | G | 0.0154 | 0.0465 | 0.0014 | – | – | – |