Literature DB >> 25369786

Structural and mechanical properties of cardiolipin lipid bilayers determined using neutron spin echo, small angle neutron and X-ray scattering, and molecular dynamics simulations.

Jianjun Pan1, Xiaolin Cheng, Melissa Sharp, Chian-Sing Ho, Nawal Khadka, John Katsaras.   

Abstract

The detailed structural and mechanical properties of a tetraoleoyl cardiolipin (TOCL) bilayer were determined using neutron spin echo (NSE) spectroscopy, small angle neutron and X-ray scattering (SANS and SAXS, respectively), and molecular dynamics (MD) simulations. We used MD simulations to develop a scattering density profile (SDP) model, which was then utilized to jointly refine SANS and SAXS data. In addition to commonly reported lipid bilayer structural parameters, component distributions were obtained, including the volume probability, electron density and neutron scattering length density. Of note, the distance between electron density maxima DHH (39.4 Å) and the hydrocarbon chain thickness 2DC (29.1 Å) of TOCL bilayers were both found to be larger than the corresponding values for dioleoyl phosphatidylcholine (DOPC) bilayers. Conversely, TOCL bilayers have a smaller overall bilayer thickness DB (36.7 Å), primarily due to their smaller headgroup volume per phosphate. SDP analysis yielded a lipid area of 129.8 Å(2), indicating that the cross-sectional area per oleoyl chain in TOCL bilayers (i.e., 32.5 Å(2)) is smaller than that for DOPC bilayers. Multiple sets of MD simulations were performed with the lipid area constrained at different values. The calculated surface tension versus lipid area resulted in a lateral area compressibility modulus KA of 342 mN m(-1), which is slightly larger compared to DOPC bilayers. Model free comparison to experimental scattering data revealed the best simulated TOCL bilayer from which detailed molecular interactions were determined. Specifically, Na(+) cations were found to interact most strongly with the glycerol hydroxyl linkage, followed by the phosphate and backbone carbonyl oxygens. Inter- and intra-lipid interactions were facilitated by hydrogen bonding between the glycerol hydroxyl and phosphate oxygen, but not with the backbone carbonyl. Finally, analysis of the intermediate scattering functions from NSE spectroscopy measurements of TOCL bilayers yielded a bending modulus KC of 1.06 × 10(-19) J, which was larger than that observed in DOPC bilayers. Our results show the physicochemical properties of cardiolin bilayers that may be important in explaining their functionality in the inner mitochondrial membrane.

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Year:  2015        PMID: 25369786     DOI: 10.1039/c4sm02227k

Source DB:  PubMed          Journal:  Soft Matter        ISSN: 1744-683X            Impact factor:   3.679


  21 in total

1.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

Authors:  Giray Enkavi; Matti Javanainen; Waldemar Kulig; Tomasz Róg; Ilpo Vattulainen
Journal:  Chem Rev       Date:  2019-03-12       Impact factor: 60.622

2.  A New Computational Method for Membrane Compressibility: Bilayer Mechanical Thickness Revisited.

Authors:  Milka Doktorova; Michael V LeVine; George Khelashvili; Harel Weinstein
Journal:  Biophys J       Date:  2019-01-03       Impact factor: 4.033

3.  Determination of bending rigidity and tilt modulus of lipid membranes from real-space fluctuation analysis of molecular dynamics simulations.

Authors:  M Doktorova; D Harries; G Khelashvili
Journal:  Phys Chem Chem Phys       Date:  2017-06-28       Impact factor: 3.676

4.  Molecular Dynamics Analysis of Cardiolipin and Monolysocardiolipin on Bilayer Properties.

Authors:  Kevin J Boyd; Nathan N Alder; Eric R May
Journal:  Biophys J       Date:  2018-05-08       Impact factor: 4.033

5.  The ionization properties of cardiolipin and its variants in model bilayers.

Authors:  Murugappan Sathappa; Nathan N Alder
Journal:  Biochim Biophys Acta       Date:  2016-03-07

6.  Surface-Binding to Cardiolipin Nanodomains Triggers Cytochrome c Pro-apoptotic Peroxidase Activity via Localized Dynamics.

Authors:  Mingyue Li; Abhishek Mandal; Vladimir A Tyurin; Maria DeLucia; Jinwoo Ahn; Valerian E Kagan; Patrick C A van der Wel
Journal:  Structure       Date:  2019-03-14       Impact factor: 5.006

7.  Lipid-modulation of membrane insertion and refolding of the apoptotic inhibitor Bcl-xL.

Authors:  Victor Vasquez-Montes; Mauricio Vargas-Uribe; Nitin K Pandey; Mykola V Rodnin; Ralf Langen; Alexey S Ladokhin
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2019-04-18       Impact factor: 3.036

8.  Molecular Structure of Sphingomyelin in Fluid Phase Bilayers Determined by the Joint Analysis of Small-Angle Neutron and X-ray Scattering Data.

Authors:  Milka Doktorova; Norbert Kučerka; Jacob J Kinnun; Jianjun Pan; Drew Marquardt; Haden L Scott; Richard M Venable; Richard W Pastor; Stephen R Wassall; John Katsaras; Frederick A Heberle
Journal:  J Phys Chem B       Date:  2020-06-16       Impact factor: 2.991

Review 9.  Mitochondrial Cristae Architecture and Functions: Lessons from Minimal Model Systems.

Authors:  Frédéric Joubert; Nicolas Puff
Journal:  Membranes (Basel)       Date:  2021-06-23

10.  Activation of Cytochrome C Peroxidase Function Through Coordinated Foldon Loop Dynamics upon Interaction with Anionic Lipids.

Authors:  Mingyue Li; Wanyang Sun; Vladimir A Tyurin; Maria DeLucia; Jinwoo Ahn; Valerian E Kagan; Patrick C A van der Wel
Journal:  J Mol Biol       Date:  2021-05-24       Impact factor: 6.151

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