| Literature DB >> 25369080 |
Pawel P Wolkow1, Wladyslaw Kosiniak-Kamysz2, Grzegorz Osmenda2, Grzegorz Wilk2, Beata Bujak-Gizycka1, Adam Ignacak2, Mihir Kanitkar3, Malgorzata Walus-Miarka4, David G Harrison3, Ryszard Korbut5, Maciej T Malecki6, Tomasz J Guzik7.
Abstract
BACKGROUND: The genetic background of atherosclerosis in type 2 diabetes mellitus (T2DM) is complex and poorly understood. Studying genetic components of intermediate phenotypes, such as endothelial dysfunction and oxidative stress, may aid in identifying novel genetic components for atherosclerosis in diabetic patients.Entities:
Mesh:
Substances:
Year: 2014 PMID: 25369080 PMCID: PMC4219671 DOI: 10.1371/journal.pone.0108587
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1LD within GCH1 gene locus.
(A) Extent of LD between polymorphisms at the GCH1 gene locus, based on HapMap Phase II data. Two black triangles designate two haplotype blocks of tight LD. (B) Physical location and minor allele frequency of 5 genotyped polymorphisms from GCH1 locus according to UCSC Genome Browser (Feb 2009 assembly). (C) LD analysis between 5 polymorphisms, genotyped in T2DM subjects from the Polish population, forms two separate haplotype blocks. Data were analyzed and visualized with Haploview ver. 4.2. Haplotype blocks were defined based on the solid spine of LD rule. Numeric values represent Lewontin's D′ between pairs of polymorphisms.
Clinical characteristics of the studied T2DM patients.
| Clinical feature | Value in 182 patients |
| Female sex (%) | 50 |
| Age at examination (years) | 56.5 [37–72] |
|
| |
| Use of oral antidiabetic drugs (%) | 63.2 |
| Use of insulin (%) | 52.8 |
| Any form of retinopathy (%) | 39 |
| Nephropathy (%) | 16.5 |
| Neuropathy (%) | 34.1 |
| Age at diagnosis (years) | 47 [26–68] |
| Duration of diabetes (years) | 9 |
| Current blood glucose (mmol/L) | 9.2 [4.3–34] |
| Hemoglobin A1c (%) | 7.6 [5.1–14.2] |
| Peptide C (ng/mL) | 3 [0.15–11.5] |
| Serum creatinine (µmol/L) | 75.3 [47–386.4] |
| Renal dysfunction; serum creatinine>155 µmol/L (%) | 5.0 |
| ALAT (IU/L) | 20 [8–90] |
|
| |
| Hypertension (%) | 88.5 |
| Ever smoking status (%) | 59.1 |
| Current smoking status (%) | 21.6 |
| Overweight/Obesity (%) | Overweight –29.7; Obese –59.9 |
| BMI (kg/m2) | 31.4 [21–56.4] |
| Total cholesterol (mmol/L) | 5.1 [2.7–19.6] |
| LDL cholesterol (mmol/L) | 2.9 [0.5–7.3] |
| HDL cholesterol (mmol/L) | 1.1 [0.4–2.5] |
| Triglycerides (mmol/L) | 1.9 [0.6–14.1] |
|
| |
| Ischaemic heart disease (%) | 47.8 |
| CCS classification (%) | 0–50; 1–24.7; 2–17.6; 3–7.7 |
| PTCA performed in the past (%) | 11.5 |
| Myocardial infarction in the past (%) | 12.1 |
| Presence of atherosclerotic plaque (%) | 60.4 |
|
| |
| ACE inhibitors (%) | 76.9 |
| diuretics (%) | 50 |
| beta – blockers (%) | 37 |
| calcium blockers (%) | 23.6 |
| alpha – blockers (%) | 7.7 |
| nitrates (%) | 14.8 |
| aspirin (%) | 43.4 |
| statins (%) | 49.7 |
|
| |
| IMT (mm, average of 12 measurements) | 0.84 [0.55–1.1] |
| IMT (mm, maximum of 12 measurements) | 1 [0.7–1.5] |
| FMD (ratio to baseline at 5 minutes) | 1.03 [1–1.24] |
| NMD (ratio to baseline at 5 minutes) | 1.12 [1–1.31] |
| MDA (µmol/L) | 3.32 [0.16–22.3] |
| vWF (% of normal population) | 101.3 [37.5–144.1] |
* Frequency of occurrence among patients for categorical variables or median [minimum; maximum] value for continuous variables.
** At the time of examination 42 T2DM patients use both insulin and oral hypoglycemic drugs, 54 use only insulin, 73 use only oral hypoglycemic drugs, 13 use neither insulin nor oral hypoglycemic drugs (diet and physical exercises only).
Association of individual GCH1 gene polymorphisms with outcome variables.
| Outcome variable | SNP | P value |
| FMD (max) | Rs10483639 | 0.056 |
| Rs841 |
| |
| Rs3783641 | 0.09 | |
| Rs10137071 | 0.63 | |
| Rs8007267 | 0.47 | |
| NMD (max) | Rs10483639 | 0.24 |
| Rs841 | 0.25 | |
| Rs3783641 | 0.19 | |
| Rs10137071 | 0.29 | |
| Rs8007267 | 0.07 | |
| IMT (mean) | Rs10483639 | 0.15 |
| Rs841 | 0.22 | |
| Rs3783641 | 0.08 | |
| Rs10137071 | 0.28 | |
| Rs8007267 | 0.11 | |
| IMT (max) | Rs10483639 | 0.21 |
| Rs841 | 0.09 | |
| Rs3783641 | 0.06 | |
| Rs10137071 | 0.40 | |
| Rs8007267 | 0.13 | |
| MDA | Rs10483639 |
|
| Rs841 |
| |
| Rs3783641 |
| |
| Rs10137071 | 0.51 | |
| Rs8007267 |
| |
| vWF | Rs10483639 |
|
| Rs841 |
| |
| Rs3783641 |
| |
| Rs10137071 | 0.75 | |
| Rs8007267 | 0.055 |
Figure 2Relationship between rs841 polymorphism in the 3'-UTR of GCH1 gene and vascular function measured as endothelium dependent FMD (panel A) and endothelium independent NMD) (panel B).
AA indicates frequent homozygote, Aa - heterozygote, aa - rare homozygote.
Figure 3Relationship between studied polymorphisms and plasma vWF concentration.
Relationship to polymorphisms forming haplotype block 1 (panel A) and haplotype block 2 (panel B) is demonstrated. Statistical significance of linear regression: * p<0.05.
Figure 4Relationship between studied polymorphisms and plasma MDA concentration measured by mass-spec analysis.
Relationship to polymorphisms forming haplotype block 1 (panel A) and haplotype block 2 (panel B) is demonstrated. Statistical significance of linear regression: * p<0.05; ** p<0.01.
Association of two GCH1 gene haplotype blocks, formed by 5 studied polymorphisms with outcome variables.
| Studied variable | Haplotype block | P value for association |
| FMD max | 1 | 0.27 |
| 2 | 0.72 | |
| NMD | 1 | 0.6 |
| 2 | 0.16 | |
| IMT (average) | 1 | 0.5 |
| 2 | 0.1 | |
| IMT (max) | 1 | 0.44 |
| 2 | 0.16 | |
| MDA | 1 |
|
| 2 |
| |
| vWF | 1 |
|
| 2 | 0.12 |
* Haplotype block 1 consists of the following SNPs: Rs10483639, Rs841, Rs3783641 (estimated haplotype frequencies: GAT 79.9%; CGA 15.4%; GAA 2%; CGT 2%. Haplotype block 2 consists of the following SNPs: Rs10137071, Rs8007267 (estimated haplotype frequencies: AC 75.5%; AT 16.8%; GC 7.7%).
Models of association of GCH1 gene polymorphisms with outcome variables, accounting for current smoking, kidney dysfunction* and diabetes duration covariates.
| Outcome variable | Model including single SNP | Model including SNP and covariates | Beta coefficient | P value |
|
| rs841 | −0.018 | 0.01 | |
| rs841 | −0.017 | 0.015 | ||
| Current smoking | −0.011 | 0.2 | ||
| Renal dysfunction | −0.0009 | 0.17 | ||
| Diabetes duration | −0.0022 | 0.93 | ||
|
| rs10483639 | 1.216 | 0.01 | |
| rs10483639 | 1.042 | 0.03 | ||
| Current smoking | −0.84 | 0.15 | ||
| Renal dysfunction | 0.06 | 0.23 | ||
| Diabetes duration | −0.8 | 0.42 | ||
| rs841 | 1.583 | 0.001 | ||
| rs841 | −0.755 | 0.19 | ||
| Current smoking | 0.04 | 0.35 | ||
| Renal dysfunction | −1.341 | 0.44 | ||
| Diabetes duration | 1.431 | 0.005 | ||
| rs3783641 | 1.457 | 0.003 | ||
| rs3783641 | 1.298 | 0.01 | ||
| Current smoking | −0.931 | 0.10 | ||
| Renal dysfunction | 0.0412 | 0.35 | ||
| Diabetes duration | −1.068 | 0.50 | ||
| rs8007267 | 1.337 | 0.006 | ||
| rs8007267 | 1.136 | 0.024 | ||
| Current smoking | −0.862 | 0.14 | ||
| Renal dysfunction | 0.05 | 0.28 | ||
| Diabetes duration | −1.243 | 0.44 | ||
|
| rs10483639 | −6.453 | 0.016 | |
| rs10483639 | −5.706 | 0.033 | ||
| Current smoking | −4.99 | 0.12 | ||
| Renal dysfunction | 0.098 | 0.69 | ||
| Diabetes duration | 16.91 | 0.03 | ||
| rs841 | −5.839 | 0.031 | ||
| rs841 | −5.371 | 0.047 | ||
| Current smoking | −4.546 | 0.13 | ||
| Renal dysfunction | −0.069 | 0.78 | ||
| Diabetes duration | 15.47 | 0.065 | ||
| rs3783641 | −5.445 | 0.045 | ||
| rs3783641 | −4.728 | 0.081 | ||
| Current smoking | −4.486 | 0.15 | ||
| Renal dysfunction | −0.0389 | 0.87 | ||
| Diabetes duration | 16.8 | 0.03 |
* Renal dysfunction is defined as patients having creatinine concentration above 155 µmol/L.