Literature DB >> 25356529

An NMR method for the quantitative assessment of intramolecular hydrogen bonding; application to physicochemical, environmental, and biochemical properties.

Michael H Abraham1, Raymond J Abraham, William E Acree, Abil E Aliev, Al J Leo, William L Whaley.   

Abstract

(1)H NMR chemical shifts have been obtained in the solvents deuterochloroform and dimethyl sulfoxide. The difference in the chemical shifts of an OH or NH group in these two solvents, Δδ = δ(DMSO) - δ(CDCl3), can be converted into the hydrogen bond acidity, A, of the group using the equation A = 0.0065 + 0.133Δδ. The NMR A value, ANMR, can be used as a quantitative assessment of intramolecular hydrogen bonding. We list values of Δδ and ANMR for 55 compounds containing an OH group and 60 compounds with an NH group. For the hydroxy compounds, if A > 0.5 then the OH group is not part of an intramolecular hydrogen bond, but if A < 0.1 then the OH group forms part of an intramolecular hydrogen bond. For NH compounds, if A > 0.16 the NH group is not part of an intramolecular hydrogen bond, and if A < 0.05 the NH group is part of an intramolecular hydrogen bond. No comparison compounds are needed, and the method is extremely simple. We further show how it is possible to relate intramolecular hydrogen bonding to the actual effect on values of a number of physicochemical, environmental, and biochemical properties.

Entities:  

Year:  2014        PMID: 25356529     DOI: 10.1021/jo502080p

Source DB:  PubMed          Journal:  J Org Chem        ISSN: 0022-3263            Impact factor:   4.354


  8 in total

1.  Structural and conformational determinants of macrocycle cell permeability.

Authors:  Björn Over; Pär Matsson; Christian Tyrchan; Per Artursson; Bradley C Doak; Michael A Foley; Constanze Hilgendorf; Stephen E Johnston; Maurice D Lee; Richard J Lewis; Patrick McCarren; Giovanni Muncipinto; Ulf Norinder; Matthew W D Perry; Jeremy R Duvall; Jan Kihlberg
Journal:  Nat Chem Biol       Date:  2016-10-17       Impact factor: 15.040

2.  Structure-Property Relationship Study of N-(Hydroxy)Peptides for the Design of Self-Assembled Parallel β-Sheets.

Authors:  Alexis D Richaud; Stéphane P Roche
Journal:  J Org Chem       Date:  2020-09-17       Impact factor: 4.354

3.  Intramolecular N-H⋅⋅⋅F Hydrogen Bonding Interaction in a Series of 4-Anilino-5-Fluoroquinazolines: Experimental and Theoretical Characterization of Electronic and Conformational Effects.

Authors:  Lorenz M Urner; Ga Young Lee; Joseph W Treacy; Aneta Turlik; Saeed I Khan; K N Houk; Michael E Jung
Journal:  Chemistry       Date:  2021-12-04       Impact factor: 5.020

Review 4.  High throughput methods to measure the propensity of compounds to form intramolecular hydrogen bonding.

Authors:  Giulia Caron; Maura Vallaro; Giuseppe Ermondi
Journal:  Medchemcomm       Date:  2017-04-27       Impact factor: 3.597

5.  Importance of Binding Site Hydration and Flexibility Revealed When Optimizing a Macrocyclic Inhibitor of the Keap1-Nrf2 Protein-Protein Interaction.

Authors:  Fabio Begnini; Stefan Geschwindner; Patrik Johansson; Lisa Wissler; Richard J Lewis; Emma Danelius; Andreas Luttens; Pierre Matricon; Jens Carlsson; Stijn Lenders; Beate König; Anna Friedel; Peter Sjö; Stefan Schiesser; Jan Kihlberg
Journal:  J Med Chem       Date:  2022-02-02       Impact factor: 7.446

6.  Machine learning models for hydrogen bond donor and acceptor strengths using large and diverse training data generated by first-principles interaction free energies.

Authors:  Christoph A Bauer; Gisbert Schneider; Andreas H Göller
Journal:  J Cheminform       Date:  2019-09-11       Impact factor: 5.514

7.  Synthesis of a coumarin derivative of resorcin[4]arene with solvent-controlled chirality.

Authors:  Anna Szafraniec; Waldemar Iwanek
Journal:  RSC Adv       Date:  2020-03-30       Impact factor: 3.361

8.  Asymmetric Phenyl Substitution: An Effective Strategy to Enhance the Photosensitizing Potential of Curcuminoids.

Authors:  Guglielmo Vesco; Martino Brambati; Luca Scapinello; Andrea Penoni; Massimo Mella; Màr Masson; Vivek Gaware; Angelo Maspero; Luca Nardo
Journal:  Pharmaceuticals (Basel)       Date:  2022-07-09
  8 in total

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