| Literature DB >> 25355168 |
Marcella Martinelli1,2, Luca Scapoli3,4, Francesca Cura5,6, Maria Teresa Rodia7,8, Giampaolo Ugolini9, Isacco Montroni10, Rossella Solmi11,12.
Abstract
BACKGROUND: The ATP-binding cassette transporter B1 (ABCB1) gene codes for a membrane efflux pump localized in epithelial cells. Together with other Permeability-glycoproteins in the small and large intestine, its product represents a barrier against xenobiotics, bacterial toxins, drugs and other substances introduced with diet, including carcinogens. The aim of this investigation was to verify the possible contribution of ABCB1 single nucleotide polymorphisms (SNPs) to the genetic risk of colorectal cancer (CRC).Entities:
Mesh:
Substances:
Year: 2014 PMID: 25355168 PMCID: PMC4428509 DOI: 10.1186/s12929-014-0089-8
Source DB: PubMed Journal: J Biomed Sci ISSN: 1021-7770 Impact factor: 8.410
Patient and control group information
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| Age | 70 ± 13 | 68 ± 12 | 0.26 | |
| Gender | Male | 52 | 49 | 0.57 |
| Female | 46 | 51 | ||
| Grading | G1 | 5 | - | |
| G2 | 65 | - | ||
| G3 | 21 | - | ||
| N.D.a | 7 | - | ||
| Position | Cecum | 1 | - | |
| Ascending colon | 33 | - | ||
| Transverse colon | 9 | - | ||
| Descending colon | 12 | - | ||
| Sigmoid colon | 20 | - | ||
| Rectum | 23 | - | ||
aNot Determined.
Genotyping information about SNP rs1128503 mapping on exon 12
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| Controls | 100 | 33 | 45 | 22 | 0.44 |
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| Cases | 96 | 37 | 38 | 21 | 0.42 | 0.57 | |
| Cases | Grade 1 | 5 | 2 | 1 | 2 | 0.5 | 0.76 |
| Grade 2 | 64 | 24 | 27 | 13 | 0.41 | 0.58 | |
| Grade 3 | 20 | 8 | 7 | 5 | 0.43 | 0.82 | |
| Cases | Colon | 51 | 19 | 21 | 11 | 0.42 | 0.70 |
| Sigmoid colon | 21 | 14 | 5 | 2 | 0.21 | 0.0056 | |
| Rectum | 24 | 4 | 12 | 8 | 0.58 | 0.085 | |
| Controls | Male | 49 | 14 | 24 | 11 | 0.47 |
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| Cases | Male | 52 | 25 | 21 | 6 | 0.32 | 0.027 |
| Controls | Female | 51 | 19 | 21 | 11 | 0.42 |
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| Cases | Female | 44 | 12 | 17 | 15 | 0.53 | 0.12 |
aNumber of individuals.
bMinor Allele Frequency.
creference.
Genotyping information about SNP rs2032582 mapping on exon 21
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| Controls | 100 | 32 | 44 | 24 | 0.46 |
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| Cases | 98 | 32 | 45 | 21 | 0.44 | 0.75 | |
| Cases | Grade 1 | 5 | 2 | 1 | 2 | 0.5 | 1.00 |
| Grade 2 | 65 | 20 | 31 | 14 | 0.45 | 0.91 | |
| Grade 3 | 21 | 8 | 8 | 5 | 0.43 | 0.71 | |
| Cases | Colon | 52 | 15 | 26 | 11 | 0.46 | 0.98 |
| Sigmoid colon | 22 | 12 | 8 | 2 | 0.27 | 0.023 | |
| Rectum | 24 | 5 | 11 | 8 | 0.56 | 0.20 | |
| Controls | Male | 49 | 16 | 21 | 12 | 0.46 |
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| Cases | Male | 52 | 20 | 26 | 6 | 0.37 | 0.18 |
| Controls | Female | 51 | 16 | 23 | 12 | 0.46 |
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| Cases | Female | 46 | 12 | 19 | 15 | 0.53 | 0.32 |
aNumber of individuals.
bMinor Allele Frequency.
creference.
Genotyping information about SNP rs1045642 mapping on exon 26
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| Controls | 100 | 29 | 42 | 29 | 0.5 |
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| Cases | 97 | 28 | 45 | 24 | 0.48 | 0.68 | |
| Cases | Grade 1 | 5 | 2 | 1 | 2 | 0.5 | 1.00 |
| Grade 2 | 64 | 17 | 29 | 18 | 0.51 | 0.89 | |
| Grade 3 | 21 | 8 | 10 | 3 | 0.38 | 0.16 | |
| Cases | Colon | 51 | 14 | 27 | 10 | 0.46 | 0.52 |
| Sigmoid colon | 22 | 8 | 7 | 7 | 0.48 | 0.78 | |
| Rectum | 24 | 6 | 11 | 7 | 0.52 | 0.79 | |
| Controls | Male | 49 | 13 | 20 | 16 | 0.53 |
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| Cases | Male | 51 | 17 | 26 | 8 | 0.41 | 0.092 |
| Controls | Female | 51 | 16 | 22 | 13 | 0.47 |
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| Cases | Female | 46 | 11 | 19 | 16 | 0.55 | 0.24 |
aNumber of individuals.
bMinor Allele Frequency.
creference.
Logistic regression analysis to test if sigmoid colon cancer (0 = healthy controls, 1 = sigmoid colon) can be modeled by rs1128503 genotype and gender
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| rs1128503 | 7.57 | 2 | 0.02 | |||
| CT vs CC | -1.35 | 0.57 | 5.58 | 1 | 0.02 | 0.26 (0.08–0.79) |
| TT vs CC | -1.53 | 0.81 | 3.60 | 1 | 0.06 | 0.22 (0.04–1.05) |
| Gender (0 = male, 1 = female) | -0.33 | 0.50 | 0.44 | 1 | 0.51 | 0.72 (0.27–1.92) |
| Constant | -0.70 | 0.39 | 3.17 | 1 | 0.07 | |
| Model |
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aregression coefficient.
bstandard error.
cWald test.
ddegrees of freedom.
Logistic regression analysis to test if sex ratio among patients (0 = male patients, 1 = female patients) can be modeled by rs1128503 genotype, histological grade, tumor localization, and age of diagnosis
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| rs1128503 | 9.52 | 2.00 | 0.01 | |||
| CT vs CC | -2.22 | 0.72 | 9.51 | 1.00 | 0.00 | 0.11 (0.03–0.45) |
| TT vs CC | -1.45 | 0.67 | 4.67 | 1.00 | 0.03 | 0.24 (0.06–0.87) |
| Grade | 5.27 | 2.00 | 0.07 | |||
| G2 vs G1 | -1.91 | 1.23 | 2.42 | 1.00 | 0.12 | 0.15 (0.01–1.65) |
| G3 vs G1 | -1.33 | 0.61 | 4.75 | 1.00 | 0.03 | 0.26 (0.08–0.87) |
| Localization | 1.18 | 2.00 | 0.55 | |||
| sigma vs colon | 0.61 | 0.61 | 1.02 | 1.00 | 0.31 | 1.85 (0.56–6.08) |
| rectum vs colon | 0.68 | 0.75 | 0.83 | 1.00 | 0.36 | 1.98 (0.46–8.57) |
| Age | -0.01 | 0.02 | 0.23 | 1.00 | 0.63 | |
| Constant | 2.54 | 1.63 | 2.43 | 1.00 | 0.12 | |
| Model |
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aregression coefficient.
bstandard error.
cWald test.
ddegrees of freedom.
Allele and haplotype association analysis for sigmoid colon cancer
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| C | - | - | 33.0 | 111.0 | 0.79 | 0.56 |
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| T | - | - | 9.0 | 89.0 | 0.21 | 0.45 | 0.34 (0.15–0.75) | 7.668 | 0.0056 |
| - | G | - | 32.0 | 108.0 | 0.73 | 0.54 |
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| - | T | - | 12.0 | 92.0 | 0.27 | 0.46 | 0.44 (0.21–0.90) | 5.172 | 0.023 |
| - | - | C | 23.0 | 100.0 | 0.52 | 0.50 |
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| - | - | T | 21.0 | 100.0 | 0.48 | 0.50 | 0.91 (0.48–0.76) | 0.075 | 0.78 |
| C | G | - | 30.0 | 97.4 | 0.71 | 0.49 |
| 7.104 | 0.0077 |
| C | T | - | 3.0 | 13.6 | 0.07 | 0.07 | 0.72 (0.19–2.68) | 0.018 | 0.89 |
| T | G | - | 0.0 | 10.6 | 0.00 | 0.05 | not calculable | 2.237 | 0.13 |
| T | T | - | 9.0 | 78.4 | 0.21 | 0.39 | 0.37 (0.16–0.83) | 4.916 | 0.027 |
| C | - | C | 22.0 | 91.0 | 0.52 | 0.48 |
| 0.277 | 0.60 |
| C | - | T | 11.0 | 16.0 | 0.26 | 0.08 | 2.84 (1.16–6.98) | 10.560 | 0.0012 |
| T | - | T | 9.0 | 83.0 | 0.21 | 0.44 | 0.45 (0.20–1.03) | 7.120 | 0.0076 |
| - | G | C | 21.9 | 90.3 | 0.50 | 0.45 |
| 0.328 | 0.57 |
| - | G | T | 10.1 | 17.7 | 0.23 | 0.09 | 2.37 (0.94–5.92) | 7.129 | 0.0076 |
| - | T | C | 1.1 | 9.7 | 0.03 | 0.05 | 0.49 (0.06–4.09) | 0.539 | 0.46 |
| - | T | T | 10.9 | 82.3 | 0.25 | 0.41 | 0.55 (0.25–1.20) | 4.085 | 0.043 |
| C | G | C | 21.0 | 83.2 | 0.50 | 0.44 |
| 0.540 | 0.46 |
| C | G | T | 9.0 | 10.3 | 0.21 | 0.05 | 3.48 (1.23–9.82) | 11.390 | 0.00074 |
| C | T | C | 1.0 | 7.8 | 0.02 | 0.04 | 0.51 (0.06–4.37) | 0.289 | 0.59 |
| C | T | T | 2.0 | 5.7 | 0.05 | 0.03 | 1.38 (0.25–7.65) | 0.488 | 0.49 |
| T | G | T | 0.0 | 7.6 | 0.00 | 0.04 | not calculable | 1.596 | 0.21 |
| T | T | T | 9.0 | 75.5 | 0.21 | 0.40 | 0.47 (0.20–1.10) | 5.173 | 0.023 |
aM1 1236 C > T rs1128503.
bM2 2677 G > T/A rs2032582.
cM3 3435 C > T rs1045642.
dreference.
CRC male (case) versus CRC female (control) allele and haplotype association analysis
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| C | - | - | 71 | 41 | 0.68 | 0.47 |
| - | - |
| T | - | - | 33 | 47 | 0.32 | 0.53 | 0.40 (0.23–0.73) | 9.22 | 0.0024 |
| - | G | - | 66 | 43 | 0.63 | 0.47 |
| - | - |
| - | T | - | 38 | 49 | 0.37 | 0.53 | 0.50 (0.29–0.90) | 5.53 | 0.019 |
| - | - | C | 60 | 41 | 0.59 | 0.45 |
| - | - |
| - | - | T | 42 | 51 | 0.41 | 0.55 | 0.56 (0.32–0.99) | 3.94 | 0.047 |
| C | G | - | 63.8 | 34.7 | 0.61 | 0.39 |
| 9.09 | 0.003 |
| C | T | - | 7.2 | 6.3 | 0.07 | 0.07 | 0.61 (0.19–1.99) | 0.00 | 0.99 |
| T | G | - | 2.2 | 5.3 | 0.02 | 0.06 | 0.22 (0.04–1.21) | 1.88 | 0.17 |
| T | T | - | 30.8 | 41.7 | 0.30 | 0.47 | 0.4 (0.22–0.75) | 6.61 | 0.010 |
| C | - | C | 52.5 | 27.9 | 0.52 | 0.32 |
| 7.68 | 0.0056 |
| C | - | T | 17.5 | 13.2 | 0.17 | 0.15 | 0.70 (0.28–1.75) | 0.26 | 0.61 |
| T | - | C | 7.5 | 11.2 | 0.07 | 0.13 | 0.35 (0.11–1.13) | 1.49 | 0.22 |
| T | - | T | 24.5 | 35.9 | 0.24 | 0.41 | 0.36 (0.18–0.72) | 6.78 | 0.009 |
| - | G | C | 51.8 | 33.4 | 0.51 | 0.36 |
| 4.41 | 0.036 |
| - | G | T | 13.2 | 9.6 | 0.13 | 0.10 | 0.89 (0.33–2.39) | 0.26 | 0.61 |
| - | T | C | 8.2 | 7.6 | 0.08 | 0.08 | 0.70 (0.22–2.23) | 0.02 | 0.90 |
| - | T | T | 28.8 | 41.4 | 0.28 | 0.45 | 0.45 (0.24–0.86) | 5.90 | 0.015 |
| C | G | C | 49.0 | 27.4 | 0.50 | 0.32 |
| 6.35 | 0.012 |
| C | G | T | 12.9 | 7.4 | 0.13 | 0.09 | 0.97 (0.34–2.81) | 0.99 | 0.32 |
| C | T | T | 4.1 | 6.2 | 0.04 | 0.07 | 0.37 (0.10–1.45) | 0.71 | 0.40 |
| T | G | C | 2.1 | 3.2 | 0.02 | 0.04 | 0.37 (0.06–2.39) | 0.33 | 0.57 |
| T | T | C | 5.9 | 7.4 | 0.06 | 0.09 | 0.44 (0.13–1.58) | 0.55 | 0.46 |
| T | T | T | 24.0 | 34.4 | 0.24 | 0.40 | 0.39 (0.19–0.79) | 5.33 | 0.021 |
aM1 1236 C > T rs1128503.
bM2 2677 G > T/A rs2032582.
cM3 3435 C > T rs1045642.
dreference.