Literature DB >> 25352144

Electrophoretic mobility shift assay of RNA-RNA complexes.

Geunu Bak1, Kook Han, Kwang-sun Kim, Younghoon Lee.   

Abstract

A simple, rapid, and sensitive electrophoretic mobility shift assay (EMSA) can be successfully used to analyze RNA-RNA interactions. The EMSA of RNA-RNA complexes can be further used to evaluate the specificity of interactions using competitor RNAs in combination with their mutated versions or nonspecific RNAs, such as yeast tRNA. RNA is simply prepared by in vitro transcription from PCR product templates. Detailed experimental descriptions for EMSA-based analysis of specific RNA-RNA interactions between Sib RNAs and ibs mRNAs as a representative example are presented.

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Year:  2015        PMID: 25352144     DOI: 10.1007/978-1-4939-1896-6_12

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  6 in total

1.  A novel incompatibility group X3 plasmid carrying bla NDM-1 encodes a small RNA that regulates host fucose metabolism and biofilm formation.

Authors:  Chuan Huang; Liang-Zhe Liu; Hoi-Kuan Kong; Carmen O K Law; Pham Quynh Hoa; Pak-Leung Ho; Terrence C K Lau
Journal:  RNA Biol       Date:  2020-06-28       Impact factor: 4.652

2.  Cardiomyocyte-Specific Long Noncoding RNA Regulates Alternative Splicing of the Triadin Gene in the Heart.

Authors:  Yuanbiao Zhao; Andrew S Riching; Walter E Knight; Congwu Chi; Lindsey J Broadwell; Yanmei Du; Mostafa Abdel-Hafiz; Amrut V Ambardekar; David C Irwin; Catherine Proenza; Hongyan Xu; Leslie A Leinwand; Lori A Walker; Kathleen C Woulfe; Michael R Bristow; Peter M Buttrick; Kunhua Song
Journal:  Circulation       Date:  2022-07-18       Impact factor: 39.918

3.  Identification of novel sRNAs involved in biofilm formation, motility, and fimbriae formation in Escherichia coli.

Authors:  Geunu Bak; Jungmin Lee; Shinae Suk; Daun Kim; Ji Young Lee; Kwang-Sun Kim; Byong-Seok Choi; Younghoon Lee
Journal:  Sci Rep       Date:  2015-10-15       Impact factor: 4.379

Review 4.  Non-coding RNAs in cancer: platforms and strategies for investigating the genomic "dark matter".

Authors:  Katia Grillone; Caterina Riillo; Francesca Scionti; Roberta Rocca; Giuseppe Tradigo; Pietro Hiram Guzzi; Stefano Alcaro; Maria Teresa Di Martino; Pierosandro Tagliaferri; Pierfrancesco Tassone
Journal:  J Exp Clin Cancer Res       Date:  2020-06-20

Review 5.  Uncovering Novel Viral Innate Immune Evasion Strategies: What Has SARS-CoV-2 Taught Us?

Authors:  Douglas Jie Wen Tay; Zhe Zhang Ryan Lew; Justin Jang Hann Chu; Kai Sen Tan
Journal:  Front Microbiol       Date:  2022-03-23       Impact factor: 5.640

6.  Teg58, a small regulatory RNA, is involved in regulating arginine biosynthesis and biofilm formation in Staphylococcus aureus.

Authors:  Adhar C Manna; Stefano Leo; Sergey Girel; Víctor González-Ruiz; Serge Rudaz; Patrice Francois; Ambrose L Cheung
Journal:  Sci Rep       Date:  2022-09-02       Impact factor: 4.996

  6 in total

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