Literature DB >> 25346544

Intercellular delay regulates the collective period of repressively coupled gene regulatory oscillator networks.

Yongqiang Wang1, Yutaka Hori2, Shinji Hara3, Francis J Doyle4.   

Abstract

Most biological rhythms are generated by a population of cellular oscillators coupled through intercellular signaling. Recent experimental evidence shows that the collective period may differ significantly from the autonomous period in the presence of intercellular delays. The phenomenon has been investigated using delay-coupled phase oscillators, but the proposed phase model contains no direct biological mechanism, which may weaken the model's reliability in unraveling biophysical principles. Based on a published gene regulatory oscillator model, we analyze the collective period of delay-coupled biological oscillators using the multivariable harmonic balance technique. We prove that, in contradiction to the common intuition that the collective period increases linearly with the coupling delay, the collective period turns out to be a periodic function of the intercellular delay. More surprisingly, the collective period may even decrease with the intercellular delay when the delay resides in certain regions. The collective period is given in a closed-form in terms of biochemical reaction constants and thus provides biological insights as well as guidance in synthetic-biological-oscillator design. Simulation results are given based on a segmentation clock model to confirm the theoretical predictions.

Entities:  

Year:  2014        PMID: 25346544      PMCID: PMC4207127          DOI: 10.1109/TAC.2013.2270072

Source DB:  PubMed          Journal:  IEEE Trans Automat Contr        ISSN: 0018-9286            Impact factor:   5.792


  21 in total

1.  Inhibitory feedback required for network oscillatory responses to communication but not prey stimuli.

Authors:  Brent Doiron; Maurice J Chacron; Leonard Maler; André Longtin; Joseph Bastian
Journal:  Nature       Date:  2003-01-30       Impact factor: 49.962

2.  Oscillatory expression of Hes1, p53, and NF-kappaB driven by transcriptional time delays.

Authors:  Nicholas A M Monk
Journal:  Curr Biol       Date:  2003-08-19       Impact factor: 10.834

3.  Autoinhibition with transcriptional delay: a simple mechanism for the zebrafish somitogenesis oscillator.

Authors:  Julian Lewis
Journal:  Curr Biol       Date:  2003-08-19       Impact factor: 10.834

Review 4.  Ultradian oscillations in Notch signaling regulate dynamic biological events.

Authors:  Ryoichiro Kageyama; Yasutaka Niwa; Hiromi Shimojo; Taeko Kobayashi; Toshiyuki Ohtsuka
Journal:  Curr Top Dev Biol       Date:  2010       Impact factor: 4.897

5.  Multivariable harmonic balance analysis of the neuronal oscillator for leech swimming.

Authors:  Zhiyong Chen; Min Zheng; W Otto Friesen; Tetsuya Iwasaki
Journal:  J Comput Neurosci       Date:  2008-07-29       Impact factor: 1.621

Review 6.  A design principle underlying the synchronization of oscillations in cellular systems.

Authors:  Jeong-Rae Kim; Dongkwan Shin; Sung Hoon Jung; Pat Heslop-Harrison; Kwang-Hyun Cho
Journal:  J Cell Sci       Date:  2010-01-26       Impact factor: 5.285

7.  Cortical feedback controls the frequency and synchrony of oscillations in the visual thalamus.

Authors:  T Bal; D Debay; A Destexhe
Journal:  J Neurosci       Date:  2000-10-01       Impact factor: 6.167

8.  Multivariable Harmonic Balance for Central Pattern Generators.

Authors:  Tetsuya Iwasaki
Journal:  Automatica (Oxf)       Date:  2008-12-01       Impact factor: 5.944

9.  Instability of Hes7 protein is crucial for the somite segmentation clock.

Authors:  Hiromi Hirata; Yasumasa Bessho; Hiroshi Kokubu; Yoshito Masamizu; Shuichi Yamada; Julian Lewis; Ryoichiro Kageyama
Journal:  Nat Genet       Date:  2004-05-30       Impact factor: 38.330

10.  Short conduction delays cause inhibition rather than excitation to favor synchrony in hybrid neuronal networks of the entorhinal cortex.

Authors:  Shuoguo Wang; Lakshmi Chandrasekaran; Fernando R Fernandez; John A White; Carmen C Canavier
Journal:  PLoS Comput Biol       Date:  2012-01-05       Impact factor: 4.475

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  2 in total

1.  Delay decomposition approach to [Formula: see text] filtering analysis of genetic oscillator networks with time-varying delays.

Authors:  V M Revathi; P Balasubramaniam
Journal:  Cogn Neurodyn       Date:  2016-01-08       Impact factor: 5.082

2.  Differential interactions between Notch and ID factors control neurogenesis by modulating Hes factor autoregulation.

Authors:  Marcelo Boareto; Dagmar Iber; Verdon Taylor
Journal:  Development       Date:  2017-10-01       Impact factor: 6.868

  2 in total

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