Literature DB >> 25345862

UvrD helicase: an old dog with a new trick: how one step backward leads to many steps forward.

Vitaliy Epshtein1.   

Abstract

Transcription-coupled repair (TCR) is a phenomenon that exists in a wide variety of organisms from bacteria to humans. This mechanism allows cells to repair the actively transcribed DNA strand much faster than the non-transcribed one. At the sites of bulky DNA damage RNA polymerase stalls, initiating recruitment of the repair machinery. It is a commonly accepted paradigm that bacterial cells utilize a sole coupling factor, called Mfd to initiate TCR. According to that model, Mfd removes transcription complexes stalled at the lesion site and simultaneously recruits repair machinery. However, this model was recently put in doubt by various discrepancies between the proposed universal role of Mfd in the TCR and its biochemical and phenotypical properties. Here, I present a second pathway of bacterial TCR recently discovered in my laboratory, which does not involve Mfd but implicates a common repair factor, UvrD, in a central position in the process.
© 2015 WILEY Periodicals, Inc.

Entities:  

Keywords:  DNA repair; UvrD helicase; transcription-coupled repair

Mesh:

Substances:

Year:  2014        PMID: 25345862      PMCID: PMC4418501          DOI: 10.1002/bies.201400106

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  66 in total

1.  A ratchet mechanism of transcription elongation and its control.

Authors:  Gil Bar-Nahum; Vitaly Epshtein; Andrei E Ruckenstein; Ruslan Rafikov; Arkady Mustaev; Evgeny Nudler
Journal:  Cell       Date:  2005-01-28       Impact factor: 41.582

2.  A fork-clearing role for UvrD.

Authors:  Maria-José Florés; Nicolas Sanchez; Bénédicte Michel
Journal:  Mol Microbiol       Date:  2005-09       Impact factor: 3.501

Review 3.  Nucleotide excision repair.

Authors:  Joyce T Reardon; Aziz Sancar
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  2005

Review 4.  Prokaryotic nucleotide excision repair: the UvrABC system.

Authors:  James J Truglio; Deborah L Croteau; Bennett Van Houten; Caroline Kisker
Journal:  Chem Rev       Date:  2006-02       Impact factor: 60.622

5.  Induction of the SOS response increases the efficiency of global nucleotide excision repair of cyclobutane pyrimidine dimers, but not 6-4 photoproducts, in UV-irradiated Escherichia coli.

Authors:  D J Crowley; P C Hanawalt
Journal:  J Bacteriol       Date:  1998-07       Impact factor: 3.490

6.  MutS and MutL activate DNA helicase II in a mismatch-dependent manner.

Authors:  M Yamaguchi; V Dao; P Modrich
Journal:  J Biol Chem       Date:  1998-04-10       Impact factor: 5.157

7.  Mechanism of ATP-dependent translocation of E.coli UvrD monomers along single-stranded DNA.

Authors:  Christopher J Fischer; Nasib K Maluf; Timothy M Lohman
Journal:  J Mol Biol       Date:  2004-12-10       Impact factor: 5.469

8.  UvrD helicase, unlike Rep helicase, dismantles RecA nucleoprotein filaments in Escherichia coli.

Authors:  Xavier Veaute; Stéphane Delmas; Marjorie Selva; Josette Jeusset; Eric Le Cam; Ivan Matic; Francis Fabre; Marie-Agnès Petit
Journal:  EMBO J       Date:  2004-11-25       Impact factor: 11.598

9.  RNA polymerase mutants defective in the initiation of transcription-coupled DNA repair.

Authors:  A J Smith; N J Savery
Journal:  Nucleic Acids Res       Date:  2005-02-01       Impact factor: 16.971

10.  Structural basis for bacterial transcription-coupled DNA repair.

Authors:  Alexandra M Deaconescu; Anna L Chambers; Abigail J Smith; Bryce E Nickels; Ann Hochschild; Nigel J Savery; Seth A Darst
Journal:  Cell       Date:  2006-02-10       Impact factor: 41.582

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  7 in total

Review 1.  Mechanistic insights into transcription coupled DNA repair.

Authors:  Bibhusita Pani; Evgeny Nudler
Journal:  DNA Repair (Amst)       Date:  2017-06-09

Review 2.  A Magic Spot in Genome Maintenance.

Authors:  Aviram Rasouly; Bibhusita Pani; Evgeny Nudler
Journal:  Trends Genet       Date:  2016-12-05       Impact factor: 11.639

3.  Phylogenomics of Cas4 family nucleases.

Authors:  Sanjarbek Hudaiberdiev; Sergey Shmakov; Yuri I Wolf; Michael P Terns; Kira S Makarova; Eugene V Koonin
Journal:  BMC Evol Biol       Date:  2017-11-28       Impact factor: 3.260

4.  Polyvalent Proteins, a Pervasive Theme in the Intergenomic Biological Conflicts of Bacteriophages and Conjugative Elements.

Authors:  Lakshminarayan M Iyer; A Maxwell Burroughs; Swadha Anand; Robson F de Souza; L Aravind
Journal:  J Bacteriol       Date:  2017-07-11       Impact factor: 3.490

5.  The structure and function of an RNA polymerase interaction domain in the PcrA/UvrD helicase.

Authors:  Kelly Sanders; Chia-Liang Lin; Abigail J Smith; Nora Cronin; Gemma Fisher; Vasileios Eftychidis; Peter McGlynn; Nigel J Savery; Dale B Wigley; Mark S Dillingham
Journal:  Nucleic Acids Res       Date:  2017-04-20       Impact factor: 16.971

6.  PcrA Dissociates RecA Filaments and the SsbA and RecO Mediators Counterbalance Such Activity.

Authors:  Begoña Carrasco; María Moreno-Del Álamo; Rubén Torres; Juan Carlos Alonso
Journal:  Front Mol Biosci       Date:  2022-02-09

Review 7.  Formation and Recognition of UV-Induced DNA Damage within Genome Complexity.

Authors:  Philippe Johann To Berens; Jean Molinier
Journal:  Int J Mol Sci       Date:  2020-09-12       Impact factor: 5.923

  7 in total

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