Literature DB >> 25344504

An optical clearing technique for plant tissues allowing deep imaging and compatible with fluorescence microscopy.

Cherish A Warner1, Meredith L Biedrzycki2, Samuel S Jacobs2, Randall J Wisser2, Jeffrey L Caplan1, D Janine Sherrier1.   

Abstract

We report on a nondestructive clearing technique that enhances transmission of light through specimens from diverse plant species, opening unique opportunities for microscope-enabled plant research. After clearing, plant organs and thick tissue sections are amenable to deep imaging. The clearing method is compatible with immunocytochemistry techniques and can be used in concert with common fluorescent probes, including widely adopted protein tags such as GFP, which has fluorescence that is preserved during the clearing process.
© 2014 American Society of Plant Biologists. All Rights Reserved.

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Year:  2014        PMID: 25344504      PMCID: PMC4256880          DOI: 10.1104/pp.114.244673

Source DB:  PubMed          Journal:  Plant Physiol        ISSN: 0032-0889            Impact factor:   8.340


  17 in total

1.  Microtubule organization in root cells of Medicago truncatula during development of an arbuscular mycorrhizal symbiosis with Glomus versiforme.

Authors:  E B Blancaflor; L Zhao; M J Harrison
Journal:  Protoplasma       Date:  2001       Impact factor: 3.356

Review 2.  Imaging plant cells by two-photon excitation.

Authors:  José A Feijó; Nuno Moreno
Journal:  Protoplasma       Date:  2004-03-04       Impact factor: 3.356

3.  Medicago truncatula syntaxin SYP132 defines the symbiosome membrane and infection droplet membrane in root nodules.

Authors:  Christina M Catalano; Kirk J Czymmek; Janine G Gann; D Janine Sherrier
Journal:  Planta       Date:  2006-08-30       Impact factor: 4.116

4.  High-resolution whole-mount imaging of three-dimensional tissue organization and gene expression enables the study of Phloem development and structure in Arabidopsis.

Authors:  Elisabeth Truernit; Hélène Bauby; Bertrand Dubreucq; Olivier Grandjean; John Runions; Julien Barthélémy; Jean-Christophe Palauqui
Journal:  Plant Cell       Date:  2008-06-03       Impact factor: 11.277

5.  A GFP-mouse talin fusion protein labels plant actin filaments in vivo and visualizes the actin cytoskeleton in growing pollen tubes.

Authors:  B Kost; P Spielhofer; N H Chua
Journal:  Plant J       Date:  1998-11       Impact factor: 6.417

6.  Modified clearing method to show sieve tubes in minor veins of leaves.

Authors:  N R Lersten
Journal:  Stain Technol       Date:  1986-07

7.  An overview of botanical clearing technique.

Authors:  R O Gardner
Journal:  Stain Technol       Date:  1975-03

8.  A Rhizobium leguminosarum lipopolysaccharide lipid-A mutant induces nitrogen-fixing nodules with delayed and defective bacteroid formation.

Authors:  Vinata Vedam; Janine G Haynes; Elmar L Kannenberg; Russell W Carlson; D Janine Sherrier
Journal:  Mol Plant Microbe Interact       Date:  2004-03       Impact factor: 4.171

9.  A phosphate transporter from Medicago truncatula involved in the acquisition of phosphate released by arbuscular mycorrhizal fungi.

Authors:  Maria J Harrison; Gary R Dewbre; Jinyuan Liu
Journal:  Plant Cell       Date:  2002-10       Impact factor: 11.277

10.  Chloroplastic protein NRIP1 mediates innate immune receptor recognition of a viral effector.

Authors:  Jeffrey L Caplan; Padmavathi Mamillapalli; Tessa M Burch-Smith; Kirk Czymmek; S P Dinesh-Kumar
Journal:  Cell       Date:  2008-02-08       Impact factor: 41.582

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  33 in total

1.  Rapid and efficient Agrobacterium-mediated transformation of sorghum (Sorghum bicolor) employing standard binary vectors and bar gene as a selectable marker.

Authors:  Phat T Do; Hyeyoung Lee; Muruganantham Mookkan; William R Folk; Zhanyuan J Zhang
Journal:  Plant Cell Rep       Date:  2016-06-27       Impact factor: 4.570

2.  Whole-mount Clearing and Staining of Arabidopsis Flower Organs and Siliques.

Authors:  Afif Hedhly; Hannes Vogler; Christof Eichenberger; Ueli Grossniklaus
Journal:  J Vis Exp       Date:  2018-04-12       Impact factor: 1.355

3.  Cytokinin Biosynthesis Promotes Cortical Cell Responses during Nodule Development.

Authors:  Dugald Reid; Marcin Nadzieja; Ondřej Novák; Anne B Heckmann; Niels Sandal; Jens Stougaard
Journal:  Plant Physiol       Date:  2017-07-21       Impact factor: 8.340

4.  Transparency in large tissue samples.

Authors:  Nina Vogt
Journal:  Nat Methods       Date:  2015-01       Impact factor: 28.547

Review 5.  Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy.

Authors:  Hiroki R Ueda; Hans-Ulrich Dodt; Pavel Osten; Michael N Economo; Jayaram Chandrashekar; Philipp J Keller
Journal:  Neuron       Date:  2020-05-06       Impact factor: 17.173

6.  Semiautomated confocal imaging of fungal pathogenesis on plants: Microscopic analysis of macroscopic specimens.

Authors:  Katharine R Minker; Meredith L Biedrzycki; Abhishek Kolagunda; Stephen Rhein; Fabiano J Perina; Samuel S Jacobs; Michael Moore; Tiffany M Jamann; Qin Yang; Rebecca Nelson; Peter Balint-Kurti; Chandra Kambhamettu; Randall J Wisser; Jeffrey L Caplan
Journal:  Microsc Res Tech       Date:  2016-06-25       Impact factor: 2.769

7.  Genetic Screens to Target Embryo and Endosperm Pathways in Arabidopsis and Maize.

Authors:  C Stewart Gillmor; A Mark Settles; Wolfgang Lukowitz
Journal:  Methods Mol Biol       Date:  2020

Review 8.  Tissue clearing and its applications in neuroscience.

Authors:  Hiroki R Ueda; Ali Ertürk; Kwanghun Chung; Viviana Gradinaru; Alain Chédotal; Pavel Tomancak; Philipp J Keller
Journal:  Nat Rev Neurosci       Date:  2020-02       Impact factor: 34.870

9.  Early stages of legume-rhizobia symbiosis are controlled by ABCG-mediated transport of active cytokinins.

Authors:  Karolina Jarzyniak; Joanna Banasiak; Tomasz Jamruszka; Aleksandra Pawela; Martin Di Donato; Ondřej Novák; Markus Geisler; Michał Jasiński
Journal:  Nat Plants       Date:  2021-03-22       Impact factor: 15.793

Review 10.  A Sight on Single-Cell Transcriptomics in Plants Through the Prism of Cell-Based Computational Modeling Approaches: Benefits and Challenges for Data Analysis.

Authors:  Aleksandr Bobrovskikh; Alexey Doroshkov; Stefano Mazzoleni; Fabrizio Cartenì; Francesco Giannino; Ulyana Zubairova
Journal:  Front Genet       Date:  2021-05-21       Impact factor: 4.599

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