Literature DB >> 25344497

Semantic Body Browser: graphical exploration of an organism and spatially resolved expression data visualization.

Fritz Lekschas1, Harald Stachelscheid1, Stefanie Seltmann1, Andreas Kurtz2.   

Abstract

UNLABELLED: Advancing technologies generate large amounts of molecular and phenotypic data on cells, tissues and organisms, leading to an ever-growing detail and complexity while information retrieval and analysis becomes increasingly time-consuming. The Semantic Body Browser is a web application for intuitively exploring the body of an organism from the organ to the subcellular level and visualising expression profiles by means of semantically annotated anatomical illustrations. It is used to comprehend biological and medical data related to the different body structures while relying on the strong pattern recognition capabilities of human users.
AVAILABILITY AND IMPLEMENTATION: The Semantic Body Browser is a JavaScript web application that is freely available at http://sbb.cellfinder.org. The source code is provided on https://github.com/flekschas/sbb.
© The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

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Year:  2014        PMID: 25344497     DOI: 10.1093/bioinformatics/btu707

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  2 in total

1.  MyGeneFriends: A Social Network Linking Genes, Genetic Diseases, and Researchers.

Authors:  Alexis Allot; Kirsley Chennen; Yannis Nevers; Laetitia Poidevin; Arnaud Kress; Raymond Ripp; Julie Dawn Thompson; Olivier Poch; Odile Lecompte
Journal:  J Med Internet Res       Date:  2017-06-16       Impact factor: 5.428

2.  gganatogram: An R package for modular visualisation of anatograms and tissues based on ggplot2.

Authors:  Jesper L V Maag
Journal:  F1000Res       Date:  2018-09-28
  2 in total

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