Literature DB >> 25343120

Human Mendelian diseases related to abnormalities of the RNA exosome or its cofactors.

Alexandre Fabre1, Catherine Badens2.   

Abstract

The RNA exosome has a key role in RNA decays and RNA quality control. In 2012, two human Mendelian diseases: syndromic diarrhea/tricho-hepato-enteric syndrome (SD/THE) and Ponto-cerebellar hypoplasia type 1(PCH1) were linked to the RNA exosome or its cofactor's defect. SD/THE's main features are an intractable diarrhea of infancy associated with hair abnormalities, facial dysmorphism, intra uterine growth restriction and immune deficiency. SD/THE is caused by a defect of the SKI complex (TTC37 and SKIV2L), the cytoplasmic co-factor of the RNA exosome for mRNA degradation. PCH1's main features are atrophy of the pons and of the cerebellum, a progressive microcephaly with developmental delay and muscle atrophy secondary to spinal anterior horn cell loss. In 30-40% of patients, PCH1 is caused by a defect in EXOSC3 which encodes RRP40, a protein of the cap of the RNA exosome. Thanks to knowledge about other forms of PCH it could be assumed that the altered substrates are probably transfer RNA However, as there exists no patient with two null mutations, residual RNA exosome functionality is probably required to preserve viability. Thus, to date two very different human Mendelian diseases have been related to the dysfunctioning of the RNA exosome. It illustrates the versatility of the RNA exosome function and substrate.

Entities:  

Keywords:  EXOSC3; Ponto-cerebellar hypoplasia type 1; RNA exosome; SKIV2L; Syndromic diarrhea; TTC37; tricho-hepato-enteric syndrome

Year:  2014        PMID: 25343120      PMCID: PMC4204543          DOI: 10.5582/irdr.3.8

Source DB:  PubMed          Journal:  Intractable Rare Dis Res        ISSN: 2186-3644


  18 in total

1.  Germline mutations in DIS3L2 cause the Perlman syndrome of overgrowth and Wilms tumor susceptibility.

Authors:  Dewi Astuti; Mark R Morris; Wendy N Cooper; Raymond H J Staals; Naomi C Wake; Graham A Fews; Harmeet Gill; Dean Gentle; Salwati Shuib; Christopher J Ricketts; Trevor Cole; Anthonie J van Essen; Richard A van Lingen; Giovanni Neri; John M Opitz; Patrick Rump; Irene Stolte-Dijkstra; Ferenc Müller; Ger J M Pruijn; Farida Latif; Eamonn R Maher
Journal:  Nat Genet       Date:  2012-02-05       Impact factor: 38.330

2.  Exonuclease hDIS3L2 specifies an exosome-independent 3'-5' degradation pathway of human cytoplasmic mRNA.

Authors:  Michal Lubas; Christian K Damgaard; Rafal Tomecki; Dominik Cysewski; Torben Heick Jensen; Andrzej Dziembowski
Journal:  EMBO J       Date:  2013-06-11       Impact factor: 11.598

3.  Exome sequencing in a family with intellectual disability, early onset spasticity, and cerebellar atrophy detects a novel mutation in EXOSC3.

Authors:  Ginevra Zanni; Chiara Scotton; Chiara Passarelli; Mingyan Fang; Sabina Barresi; Bruno Dallapiccola; Bin Wu; Francesca Gualandi; Alessandra Ferlini; E Bertini; Wang Wei
Journal:  Neurogenetics       Date:  2013-08-24       Impact factor: 2.660

4.  SKIV2L mutations cause syndromic diarrhea, or trichohepatoenteric syndrome.

Authors:  Alexandre Fabre; Bernard Charroux; Christine Martinez-Vinson; Bertrand Roquelaure; Egritas Odul; Ersin Sayar; Hilary Smith; Virginie Colomb; Nicolas Andre; Jean-Pierre Hugot; Olivier Goulet; Caroline Lacoste; Jacques Sarles; Julien Royet; Nicolas Levy; Catherine Badens
Journal:  Am J Hum Genet       Date:  2012-03-22       Impact factor: 11.025

Review 5.  The human exosome and disease.

Authors:  Raymond H J Staals; Ger J M Pruijn
Journal:  Adv Exp Med Biol       Date:  2010       Impact factor: 2.622

6.  Mutations in the RNA exosome component gene EXOSC3 cause pontocerebellar hypoplasia and spinal motor neuron degeneration.

Authors:  Jijun Wan; Michael Yourshaw; Hafsa Mamsa; Sabine Rudnik-Schöneborn; Manoj P Menezes; Ji Eun Hong; Derek W Leong; Jan Senderek; Michael S Salman; David Chitayat; Pavel Seeman; Arpad von Moers; Luitgard Graul-Neumann; Andrew J Kornberg; Manuel Castro-Gago; María-Jesús Sobrido; Masafumi Sanefuji; Perry B Shieh; Noriko Salamon; Ronald C Kim; Harry V Vinters; Zugen Chen; Klaus Zerres; Monique M Ryan; Stanley F Nelson; Joanna C Jen
Journal:  Nat Genet       Date:  2012-04-29       Impact factor: 38.330

7.  Mutations in TTC37 cause trichohepatoenteric syndrome (phenotypic diarrhea of infancy).

Authors:  Jane Louise Hartley; Nicholas C Zachos; Ban Dawood; Mark Donowitz; Julia Forman; Rodney J Pollitt; Neil V Morgan; Louise Tee; Paul Gissen; Walter H A Kahr; Alex S Knisely; Steve Watson; David Chitayat; Ian W Booth; Sue Protheroe; Stephen Murphy; Esther de Vries; Deirdre A Kelly; Eamonn R Maher
Journal:  Gastroenterology       Date:  2010-02-20       Impact factor: 22.682

8.  EXOSC3 mutations in isolated cerebellar hypoplasia and spinal anterior horn involvement.

Authors:  Roberta Biancheri; Denise Cassandrini; Francesca Pinto; Rosanna Trovato; Maja Di Rocco; Marisol Mirabelli-Badenier; Marina Pedemonte; Chiara Panicucci; Holger Trucks; Thomas Sander; Federico Zara; Andrea Rossi; Pasquale Striano; Carlo Minetti; Filippo Maria Santorelli
Journal:  J Neurol       Date:  2013-04-07       Impact factor: 4.849

Review 9.  Syndromic diarrhea/Tricho-hepato-enteric syndrome.

Authors:  Alexandre Fabre; Christine Martinez-Vinson; Olivier Goulet; Catherine Badens
Journal:  Orphanet J Rare Dis       Date:  2013-01-09       Impact factor: 4.123

10.  Mammalian DIS3L2 exoribonuclease targets the uridylated precursors of let-7 miRNAs.

Authors:  Dmytro Ustianenko; Dominika Hrossova; David Potesil; Katerina Chalupnikova; Kristyna Hrazdilova; Jiri Pachernik; Katerina Cetkovska; Stjepan Uldrijan; Zbynek Zdrahal; Stepanka Vanacova
Journal:  RNA       Date:  2013-10-18       Impact factor: 4.942

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  17 in total

Review 1.  Management of syndromic diarrhea/tricho-hepato-enteric syndrome: A review of the literature.

Authors:  Alexandre Fabre; Patrice Bourgeois; Marie-Edith Coste; Céline Roman; Vincent Barlogis; Catherine Badens
Journal:  Intractable Rare Dis Res       Date:  2017-08

2.  Biallelic variants in the RNA exosome gene EXOSC5 are associated with developmental delays, short stature, cerebellar hypoplasia and motor weakness.

Authors:  Anne Slavotinek; Doriana Misceo; Stephanie Htun; Linda Mathisen; Eirik Frengen; Michelle Foreman; Jennifer E Hurtig; Liz Enyenihi; Maria C Sterrett; Sara W Leung; Dina Schneidman-Duhovny; Juvianee Estrada-Veras; Jacque L Duncan; Charlotte A Haaxma; Erik-Jan Kamsteeg; Vivian Xia; Daniah Beleford; Yue Si; Ganka Douglas; Hans Einar Treidene; Ambro van Hoof; Milo B Fasken; Anita H Corbett
Journal:  Hum Mol Genet       Date:  2020-08-03       Impact factor: 6.150

3.  Hydrogen-deuterium exchange mass spectrometry of Mtr4 with diverse RNAs reveals substrate-dependent dynamics and interfaces in the arch.

Authors:  Naifu Zhang; Keith J Olsen; Darby Ball; Sean J Johnson; Sheena D'Arcy
Journal:  Nucleic Acids Res       Date:  2022-04-22       Impact factor: 19.160

Review 4.  Noncoding RNA Surveillance: The Ends Justify the Means.

Authors:  Cedric Belair; Soyeong Sim; Sandra L Wolin
Journal:  Chem Rev       Date:  2017-10-12       Impact factor: 60.622

5.  Nuclear RNA Exosome at 3.1 Å Reveals Substrate Specificities, RNA Paths, and Allosteric Inhibition of Rrp44/Dis3.

Authors:  John C Zinder; Elizabeth V Wasmuth; Christopher D Lima
Journal:  Mol Cell       Date:  2016-11-03       Impact factor: 17.970

Review 6.  Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors.

Authors:  John C Zinder; Christopher D Lima
Journal:  Genes Dev       Date:  2017-01-15       Impact factor: 11.361

7.  Exosomal Protein Deficiencies: How Abnormal RNA Metabolism Results in Childhood-Onset Neurological Diseases.

Authors:  Juliane S Müller; Michele Giunta; Rita Horvath
Journal:  J Neuromuscul Dis       Date:  2015-07-22

8.  Identifying Mutations of the Tetratricopeptide Repeat Domain 37 (TTC37) Gene in Infants With Intractable Diarrhea and a Comparison of Asian and Non-Asian Phenotype and Genotype: A Global Case-report Study of a Well-Defined Syndrome With Immunodeficiency.

Authors:  Wen-I Lee; Jing-Long Huang; Chien-Chang Chen; Ju-Li Lin; Ren-Chin Wu; Tang-Her Jaing; Liang-Shiou Ou
Journal:  Medicine (Baltimore)       Date:  2016-03       Impact factor: 1.889

9.  Structure of a Cytoplasmic 11-Subunit RNA Exosome Complex.

Authors:  Eva Kowalinski; Alexander Kögel; Judith Ebert; Peter Reichelt; Elisabeth Stegmann; Bianca Habermann; Elena Conti
Journal:  Mol Cell       Date:  2016-06-23       Impact factor: 17.970

10.  Combined Immunodeficiency in Patients With Trichohepatoenteric Syndrome.

Authors:  Frédéric Vély; Vincent Barlogis; Evelyne Marinier; Marie-Edith Coste; Béatrice Dubern; Emmanuelle Dugelay; Julie Lemale; Christine Martinez-Vinson; Noël Peretti; Ariane Perry; Patrice Bourgeois; Catherine Badens; Olivier Goulet; Jean-Pierre Hugot; Catherine Farnarier; Alexandre Fabre
Journal:  Front Immunol       Date:  2018-05-11       Impact factor: 7.561

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