Literature DB >> 25342168

The network simulation method: a useful tool for locating the kinetic-thermodynamic switching point in complex kinetic schemes.

Manuel Caravaca1, Pilar Sanchez-Andrada, Antonio Soto, Mateo Alajarin.   

Abstract

The kinetic-thermodynamic switching point of a multistep process, whose reaction mechanism has been elucidated by DFT calculations, can be calculated by means of an efficient model based on the Network Simulation Method (NSM). This method can solve, fast and effectively, a difficult system of differential equations derived from a complex kinetic scheme by establishing a formal equivalence between the chemical system and an electrical network. The NSM employs very short simulation times to determine the dependence of the switching time on the temperature, a fundamental topic to take control over the product composition which has not been treated exhaustively so far, and that could be applied for synthetic purposes avoiding laborious and costly experimental trials.

Year:  2014        PMID: 25342168     DOI: 10.1039/c4cp02079k

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  3 in total

1.  Kinetic versus thermodynamic control of mutational effects on protein homeostasis: A perspective from computational modeling and experiment.

Authors:  Kristine Faye R Pobre; David L Powers; Kingshuk Ghosh; Lila M Gierasch; Evan T Powers
Journal:  Protein Sci       Date:  2019-05-24       Impact factor: 6.725

2.  SimKinet: A free educational tool based on an electrical analogy to solve chemical kinetic equations.

Authors:  Manuel Caravaca; Pilar Sanchez-Andrada; Antonio Soto-Meca
Journal:  PLoS One       Date:  2019-03-08       Impact factor: 3.240

3.  Metanetwork Transmission Model for Predicting a Malaria-Control Strategy.

Authors:  Bo Li; Xiao Liu; Wen-Juan Wang; Feng Zhao; Zhi-Yong An; Hai Zhao
Journal:  Front Genet       Date:  2018-10-17       Impact factor: 4.599

  3 in total

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