Literature DB >> 25335414

[Taxonomic status of the Chim virus (CHIMV) (Bunyaviridae, Nairovirus, Qalyub group) isolated from the Ixodidae and Argasidae ticks collected in the great gerbil (Rhombomys opimus Lichtenstein, 1823) (Muridae, Gerbillinae) burrows in Uzbekistan and Kazakhstan].

D K L'vov, S V Al'khovskiĭ, M Iu Shchelkanov, A M Shchetinin, V A Aristova, T N Morozova, A K Gitel'man, P G Deriabin, A G Botikov.   

Abstract

Full-length genome of the Chim virus (CHIMV) (strain LEIV-858Uz) was sequenced using the next-generation sequencing approach (ID GenBank: KF801656). The CHIMV/LEIV-858Uz was isolated from the Ornithodoros tartakovskyi Olenev, 1931 ticks collected in the great gerbil (Rhombomys opimus Lichtenstein, 1823) burrow in Uzbekistan near Chim town (Kashkadarinsky region) in July of 1971. Later, four more CHIMV strains were isolated from the O. tartakovskyi, O. papillipes Birula, 1895, Rhipicephalus turanicus Pomerantsev, 1936 collected in the great gerbil burrows in Kashkadarinsky, Bukhara, and Syrdarya regions of Uzbekistan, and three strains--from the Hyalomma asiaticum Schulze et Schlottke, 1930 from the great gerbil burrows in Dzheskazgan region of Kazakhstan. The virus is a potential pathogen of humans and camels. The phylogenetic analysis revealed that the CHIMV is a novel member of the Nairovirus genus (Bunyaviridae) and closely related to the Qalyub virus (QYBV), which is prototype for the group of the same name. The amino acid homology between the CHIMV and QYBV is 87% for the RdRp catalytic center (L-segment) that is coincident with both QYBV and CHIMV associated with the Ornithodoros ticks and burrow of rodents as well. The CHIMV homologies with other nairoviruses are 30-40% for the amino acid sequences of precursor polyprotein GnGc (M-segment), whereas 50%--for the nucleocapsid N (S-segment). The data obtained permit to classify the CHIMV as a member of the QYBV group in the genus of Nairovirus (Bunyaviridae).

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Year:  2014        PMID: 25335414

Source DB:  PubMed          Journal:  Vopr Virusol        ISSN: 0507-4088


  4 in total

1.  Experimental Transmission of Karshi (Mammalian Tick-Borne Flavivirus Group) Virus by Ornithodoros Ticks >2,900 Days after Initial Virus Exposure Supports the Role of Soft Ticks as a Long-Term Maintenance Mechanism for Certain Flaviviruses.

Authors:  Michael J Turell
Journal:  PLoS Negl Trop Dis       Date:  2015-08-18

2.  A Global Genomic Characterization of Nairoviruses Identifies Nine Discrete Genogroups with Distinctive Structural Characteristics and Host-Vector Associations.

Authors:  Peter J Walker; Steven G Widen; Thomas G Wood; Hilda Guzman; Robert B Tesh; Nikolaos Vasilakis
Journal:  Am J Trop Med Hyg       Date:  2016-02-22       Impact factor: 2.345

3.  Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae).

Authors:  Jens H Kuhn; Michael R Wiley; Sergio E Rodriguez; Yīmíng Bào; Karla Prieto; Amelia P A Travassos da Rosa; Hilda Guzman; Nazir Savji; Jason T Ladner; Robert B Tesh; Jiro Wada; Peter B Jahrling; Dennis A Bente; Gustavo Palacios
Journal:  Viruses       Date:  2016-06-10       Impact factor: 5.048

4.  Complete Genome Coding Sequences of Artashat, Burana, Caspiy, Chim, Geran, Tamdy, and Uzun-Agach Viruses (Bunyavirales: Nairoviridae: Orthonairovirus).

Authors:  Sergey V Alkhovsky; Dmitry K Lvov; Alexey M Shchetinin; Petr G Deriabin; Mikhail Y Shchelkanov; Valeriya A Aristova; Tatyana N Morozova; Asya K Gitelman; Gustavo F Palacios; Jens H Kuhn
Journal:  Genome Announc       Date:  2017-10-05
  4 in total

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