Literature DB >> 25332391

Tunable dynamics of microtubule-based active isotropic gels.

Gil Henkin1, Stephen J DeCamp1, Daniel T N Chen1, Tim Sanchez2, Zvonimir Dogic3.   

Abstract

We investigate the dynamics of an active gel of bundled microtubules (MTs) that is driven by clusters of kinesin molecular motors. Upon the addition of ATP, the coordinated action of thousands of molecular motors drives the gel to a highly dynamical turbulent-like state that persists for hours and is only limited by the stability of constituent proteins and the availability of the chemical fuel. We characterize how enhanced transport and emergent macroscopic flows of active gels depend on relevant molecular parameters, including ATP, kinesin motor and depletant concentrations, MT volume fraction, as well as the stoichiometry of the constituent motor clusters. Our results show that the dynamical and structural properties of MT-based active gels are highly tunable. They also indicate existence of an optimal concentration of molecular motors that maximize far-from-equilibrium activity of active isotropic MT gels.
© 2014 The Author(s) Published by the Royal Society. All rights reserved.

Entities:  

Keywords:  active matter; bundled microtubules; gels; molecular motors; spontaneous flow

Year:  2014        PMID: 25332391      PMCID: PMC4223677          DOI: 10.1098/rsta.2014.0142

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  43 in total

1.  Single kinesin molecules studied with a molecular force clamp.

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Journal:  Nature       Date:  1999-07-08       Impact factor: 49.962

2.  Anomalous diffusion probes microstructure dynamics of entangled F-actin networks.

Authors:  I Y Wong; M L Gardel; D R Reichman; Eric R Weeks; M T Valentine; A R Bausch; D A Weitz
Journal:  Phys Rev Lett       Date:  2004-04-29       Impact factor: 9.161

3.  Large-scale collective properties of self-propelled rods.

Authors:  Francesco Ginelli; Fernando Peruani; Markus Bär; Hugues Chaté
Journal:  Phys Rev Lett       Date:  2010-05-04       Impact factor: 9.161

4.  Dynamics of enhanced tracer diffusion in suspensions of swimming eukaryotic microorganisms.

Authors:  Kyriacos C Leptos; Jeffrey S Guasto; J P Gollub; Adriana I Pesci; Raymond E Goldstein
Journal:  Phys Rev Lett       Date:  2009-11-05       Impact factor: 9.161

5.  Fluctuations and rheology in active bacterial suspensions.

Authors:  D T N Chen; A W C Lau; L A Hough; M F Islam; M Goulian; T C Lubensky; A G Yodh
Journal:  Phys Rev Lett       Date:  2007-10-03       Impact factor: 9.161

6.  Defect annihilation and proliferation in active nematics.

Authors:  Luca Giomi; Mark J Bowick; Xu Ma; M Cristina Marchetti
Journal:  Phys Rev Lett       Date:  2013-05-29       Impact factor: 9.161

7.  Velocity correlations in an active nematic.

Authors:  Sumesh P Thampi; Ramin Golestanian; Julia M Yeomans
Journal:  Phys Rev Lett       Date:  2013-09-10       Impact factor: 9.161

8.  Active multistage coarsening of actin networks driven by myosin motors.

Authors:  Marina Soares e Silva; Martin Depken; Björn Stuhrmann; Marijn Korsten; Fred C MacKintosh; Gijsje H Koenderink
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-18       Impact factor: 11.205

9.  Engineering oscillating microtubule bundles.

Authors:  Timothy Sanchez; Zvonimir Dogic
Journal:  Methods Enzymol       Date:  2013       Impact factor: 1.600

10.  A universal pathway for kinesin stepping.

Authors:  Bason E Clancy; William M Behnke-Parks; Johan O L Andreasson; Steven S Rosenfeld; Steven M Block
Journal:  Nat Struct Mol Biol       Date:  2011-08-14       Impact factor: 15.369

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  22 in total

1.  Cooperative Accumulation of Dynein-Dynactin at Microtubule Minus-Ends Drives Microtubule Network Reorganization.

Authors:  Ruensern Tan; Peter J Foster; Daniel J Needleman; Richard J McKenney
Journal:  Dev Cell       Date:  2018-01-22       Impact factor: 12.270

Review 2.  From isolated structures to continuous networks: A categorization of cytoskeleton-based motile engineered biological microstructures.

Authors:  Rachel Andorfer; Joshua D Alper
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2019-02-11

3.  Perspectives in active liquid crystals.

Authors:  Apala Majumdar; Marchetti M Cristina; Epifanio G Virga
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2014-11-28       Impact factor: 4.226

4.  Statistical properties of autonomous flows in 2D active nematics.

Authors:  Linnea M Lemma; Stephen J DeCamp; Zhihong You; Luca Giomi; Zvonimir Dogic
Journal:  Soft Matter       Date:  2019-04-10       Impact factor: 3.679

5.  Microtubule Dynamics, Kinesin-1 Sliding, and Dynein Action Drive Growth of Cell Processes.

Authors:  Dietmar B Oelz; Urko Del Castillo; Vladimir I Gelfand; Alex Mogilner
Journal:  Biophys J       Date:  2018-09-11       Impact factor: 4.033

6.  Control of active liquid crystals with a magnetic field.

Authors:  Pau Guillamat; Jordi Ignés-Mullol; Francesc Sagués
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-02       Impact factor: 11.205

7.  Viscous dissipation and dynamics of defects in an active nematic interface.

Authors:  Len M Pismen; Francesc Sagués
Journal:  Eur Phys J E Soft Matter       Date:  2017-10-26       Impact factor: 1.890

Review 8.  Mechanical Properties of the Cytoskeleton and Cells.

Authors:  Adrian F Pegoraro; Paul Janmey; David A Weitz
Journal:  Cold Spring Harb Perspect Biol       Date:  2017-11-01       Impact factor: 10.005

9.  Filament rigidity and connectivity tune the deformation modes of active biopolymer networks.

Authors:  Samantha Stam; Simon L Freedman; Shiladitya Banerjee; Kimberly L Weirich; Aaron R Dinner; Margaret L Gardel
Journal:  Proc Natl Acad Sci U S A       Date:  2017-11-07       Impact factor: 11.205

10.  Microscopic origins of anisotropic active stress in motor-driven nematic liquid crystals.

Authors:  Robert Blackwell; Oliver Sweezy-Schindler; Christopher Baldwin; Loren E Hough; Matthew A Glaser; M D Betterton
Journal:  Soft Matter       Date:  2016-01-08       Impact factor: 3.679

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