Literature DB >> 25331250

Long-range correlated dynamics in intrinsically disordered proteins.

Giacomo Parigi1, Nasrollah Rezaei-Ghaleh, Andrea Giachetti, Stefan Becker, Claudio Fernandez, Martin Blackledge, Christian Griesinger, Markus Zweckstetter, Claudio Luchinat.   

Abstract

Intrinsically disordered proteins (IDPs) are involved in a wide variety of physiological and pathological processes and are best described by ensembles of rapidly interconverting conformers. Using fast field cycling relaxation measurements we here show that the IDP α-synuclein as well as a variety of other IDPs undergoes slow reorientations at time scales comparable to folded proteins. The slow motions are not perturbed by mutations in α-synuclein, which are related to genetic forms of Parkinson's disease, and do not depend on secondary and tertiary structural propensities. Ensemble-based hydrodynamic calculations suggest that the time scale of the underlying correlated motion is largely determined by hydrodynamic coupling between locally rigid segments. Our study indicates that long-range correlated dynamics are an intrinsic property of IDPs and offers a general physical mechanism of correlated motions in highly flexible biomolecular systems.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25331250     DOI: 10.1021/ja506820r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  26 in total

1.  HyRes: a coarse-grained model for multi-scale enhanced sampling of disordered protein conformations.

Authors:  Xiaorong Liu; Jianhan Chen
Journal:  Phys Chem Chem Phys       Date:  2017-12-13       Impact factor: 3.676

2.  Studying backbone torsional dynamics of intrinsically disordered proteins using fluorescence depolarization kinetics.

Authors:  Debapriya DAS; Samrat Mukhopadhyay
Journal:  J Biosci       Date:  2018-07       Impact factor: 1.826

Review 3.  Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and Dynamics.

Authors:  Tatiana Maximova; Ryan Moffatt; Buyong Ma; Ruth Nussinov; Amarda Shehu
Journal:  PLoS Comput Biol       Date:  2016-04-28       Impact factor: 4.475

4.  Remodeling of the conformational ensemble of the repeat domain of tau by an aggregation enhancer.

Authors:  Elias Akoury; Marco D Mukrasch; Jacek Biernat; Katharina Tepper; Valery Ozenne; Eckhard Mandelkow; Martin Blackledge; Markus Zweckstetter
Journal:  Protein Sci       Date:  2016-03-24       Impact factor: 6.725

5.  Comprehensive structural and dynamical view of an unfolded protein from the combination of single-molecule FRET, NMR, and SAXS.

Authors:  Mikayel Aznauryan; Leonildo Delgado; Andrea Soranno; Daniel Nettels; Jie-Rong Huang; Alexander M Labhardt; Stephan Grzesiek; Benjamin Schuler
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-26       Impact factor: 11.205

6.  Role of Backbone Dynamics in Modulating the Interactions of Disordered Ligands with the TAZ1 Domain of the CREB-Binding Protein.

Authors:  Rebecca B Berlow; Maria A Martinez-Yamout; H Jane Dyson; Peter E Wright
Journal:  Biochemistry       Date:  2019-02-22       Impact factor: 3.162

7.  Just a Flexible Linker? The Structural and Dynamic Properties of CBP-ID4 Revealed by NMR Spectroscopy.

Authors:  Alessandro Piai; Eduardo O Calçada; Thomas Tarenzi; Alessandro Del Grande; Mihaly Varadi; Peter Tompa; Isabella C Felli; Roberta Pierattelli
Journal:  Biophys J       Date:  2016-01-19       Impact factor: 4.033

Review 8.  Relating sequence encoded information to form and function of intrinsically disordered proteins.

Authors:  Rahul K Das; Kiersten M Ruff; Rohit V Pappu
Journal:  Curr Opin Struct Biol       Date:  2015-04-02       Impact factor: 6.809

9.  Direct Observation of the Intrinsic Backbone Torsional Mobility of Disordered Proteins.

Authors:  Neha Jain; Dominic Narang; Karishma Bhasne; Vijit Dalal; Shruti Arya; Mily Bhattacharya; Samrat Mukhopadhyay
Journal:  Biophys J       Date:  2016-08-23       Impact factor: 4.033

10.  The intrinsically disordered N-terminal domain of galectin-3 dynamically mediates multisite self-association of the protein through fuzzy interactions.

Authors:  Yu-Hao Lin; De-Chen Qiu; Wen-Han Chang; Yi-Qi Yeh; U-Ser Jeng; Fu-Tong Liu; Jie-Rong Huang
Journal:  J Biol Chem       Date:  2017-09-11       Impact factor: 5.157

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.