Literature DB >> 25314571

Hydrodynamics of discrete-particle models of spherical colloids: a multiparticle collision dynamics simulation study.

Simón Poblete1, Adam Wysocki1, Gerhard Gompper1, Roland G Winkler1.   

Abstract

We investigate the hydrodynamic properties of a spherical colloid model, which is composed of a shell of point particles by hybrid mesoscale simulations, which combine molecular dynamics simulations for the sphere with the multiparticle collision dynamics approach for the fluid. Results are presented for the center-of-mass and angular velocity correlation functions. The simulation results are compared with theoretical results for a rigid colloid obtained as a solution of the Stokes equation with no-slip boundary conditions. Similarly, analytical results of a point-particle model are presented, which account for the finite size of the simulated system. The simulation results agree well with both approaches on appropriative time scales; specifically, the long-time correlations are quantitatively reproduced. Moreover, a procedure is proposed to obtain the infinite-system-size diffusion coefficient based on a combination of simulation results and analytical predictions. In addition, we present the velocity field in the vicinity of the colloid and demonstrate its close agreement with the theoretical prediction. Our studies show that a point-particle model of a sphere is very well suited to describe the hydrodynamic properties of spherical colloids, with a significantly reduced numerical effort.

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Year:  2014        PMID: 25314571     DOI: 10.1103/PhysRevE.90.033314

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  5 in total

1.  Static and dynamic light scattering by red blood cells: A numerical study.

Authors:  Johannes Mauer; Matti Peltomäki; Simón Poblete; Gerhard Gompper; Dmitry A Fedosov
Journal:  PLoS One       Date:  2017-05-04       Impact factor: 3.240

2.  Weak Shape Anisotropy Leads to a Nonmonotonic Contribution to Crowding, Impacting Protein Dynamics under Physiologically Relevant Conditions.

Authors:  Jin Suk Myung; Felix Roosen-Runge; Roland G Winkler; Gerhard Gompper; Peter Schurtenberger; Anna Stradner
Journal:  J Phys Chem B       Date:  2018-12-13       Impact factor: 2.991

3.  Flagellar arrangements in elongated peritrichous bacteria: bundle formation and swimming properties.

Authors:  Judit Clopés; Roland G Winkler
Journal:  Eur Phys J E Soft Matter       Date:  2021-03-08       Impact factor: 1.890

4.  Multi-ciliated microswimmers-metachronal coordination and helical swimming.

Authors:  Sebastian Rode; Jens Elgeti; Gerhard Gompper
Journal:  Eur Phys J E Soft Matter       Date:  2021-06-08       Impact factor: 1.890

5.  Dramatic influence of patchy attractions on short-time protein diffusion under crowded conditions.

Authors:  Saskia Bucciarelli; Jin Suk Myung; Bela Farago; Shibananda Das; Gerard A Vliegenthart; Olaf Holderer; Roland G Winkler; Peter Schurtenberger; Gerhard Gompper; Anna Stradner
Journal:  Sci Adv       Date:  2016-12-07       Impact factor: 14.136

  5 in total

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