Literature DB >> 25309302

Crystal structure of 2-(3,4-di-meth-oxy-phen-yl)-3-hy-droxy-4H-chromen-4-one.

Jin Sil Yoo1, Yoongho Lim2, Dongsoo Koh1.   

Abstract

In the title compound, C17H14O5, the dimeth-oxy-substituted benzene ring is twisted relative to the 4H-chromenon skeleton (r.m.s. deviation = 0.015 Å) by 5.2 (4)°. The C atoms of the meth-oxy groups lie close to the plane of their attached benzene ring [deviations = 0.036 (3) and 0.290 (3)Å for the meta and para substituents, respectively]. An intra-molecular O-H⋯O hydrogen bond closes an S(5) ring. In the cystal, inversion dimers linked by pairs of O-H⋯O hydrogen bonds generate R 2 (2)(10) loops and C-H⋯O inter-actions connect the dimers into [010] chains.

Entities:  

Keywords:  4H-chromen-4-one; biological properties; crystal structure; flavonols; natural products

Year:  2014        PMID: 25309302      PMCID: PMC4186158          DOI: 10.1107/S1600536814018212

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the syntheses and biological properties of flavonols, see: Lee et al. (2014 ▶); Singh et al. (2014 ▶); Dias et al. (2013 ▶); Yong et al. (2013 ▶). For flavonols in natural products, see: Bendaikha et al. (2014 ▶); Prescott et al. (2013 ▶). For related structures, see: Marciniec et al. (2013 ▶); Serdiuk et al. (2013 ▶); Yu et al. (2006 ▶).

Experimental

Crystal data

C17H14O5 M = 298.28 Monoclinic, a = 8.2009 (7) Å b = 9.2917 (8) Å c = 18.2684 (15) Å β = 96.322 (2)° V = 1383.6 (2) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 200 K 0.31 × 0.18 × 0.09 mm

Data collection

Bruker SMART CCD area-detector diffractometer 9945 measured reflections 3442 independent reflections 2438 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.053 wR(F 2) = 0.204 S = 1.20 3442 reflections 202 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.56 e Å−3

Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814018212/hb7265sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814018212/hb7265Isup2.hkl Click here for additional data file. . DOI: 10.1107/S1600536814018212/hb7265fig1.tif Mol­ecular structure of the title compound, showing displacement ellipsoids drawn at the 50% probability level. Click here for additional data file. . DOI: 10.1107/S1600536814018212/hb7265fig2.tif Part of the crystal structure with inter­molecular O—H⋯O hydrogen bonds shown as dashed lines CCDC reference: 1018484 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H14O5F(000) = 624
Mr = 298.28Dx = 1.432 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 5723 reflections
a = 8.2009 (7) Åθ = 2.2–28.3°
b = 9.2917 (8) ŵ = 0.11 mm1
c = 18.2684 (15) ÅT = 200 K
β = 96.322 (2)°Block, orange
V = 1383.6 (2) Å30.31 × 0.18 × 0.09 mm
Z = 4
Bruker SMART CCD area-detector diffractometer2438 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.033
Graphite monochromatorθmax = 28.3°, θmin = 2.2°
phi and ω scansh = −10→8
9945 measured reflectionsk = −12→10
3442 independent reflectionsl = −24→23
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.053Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.204H-atom parameters constrained
S = 1.20w = 1/[σ2(Fo2) + (0.0768P)2 + 1.2451P] where P = (Fo2 + 2Fc2)/3
3442 reflections(Δ/σ)max < 0.001
202 parametersΔρmax = 0.41 e Å3
0 restraintsΔρmin = −0.56 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4617 (3)0.3933 (2)−0.06661 (11)0.0482 (5)
C10.5311 (3)0.2734 (3)−0.06091 (14)0.0359 (5)
C20.4995 (3)0.1608 (3)−0.11530 (13)0.0331 (5)
C30.3917 (3)0.1776 (3)−0.17952 (14)0.0376 (6)
H30.33730.2669−0.18930.045*
C40.3639 (3)0.0662 (3)−0.22855 (14)0.0418 (6)
H40.29050.0787−0.27210.050*
C50.4433 (3)−0.0657 (3)−0.21466 (14)0.0415 (6)
H50.4236−0.1426−0.24880.050*
C60.5503 (3)−0.0846 (3)−0.15152 (14)0.0366 (5)
H60.6038−0.1743−0.14170.044*
C70.5784 (3)0.0295 (3)−0.10267 (12)0.0314 (5)
O20.6861 (2)0.00521 (17)−0.04197 (9)0.0324 (4)
C80.7237 (3)0.1100 (2)0.00988 (12)0.0294 (5)
C90.6471 (3)0.2409 (3)0.00173 (13)0.0328 (5)
O30.6804 (2)0.34504 (19)0.05317 (11)0.0446 (5)
H3A0.61950.41640.04250.067*
C100.8434 (3)0.0586 (2)0.06893 (12)0.0299 (5)
C110.8933 (3)−0.0875 (2)0.06779 (12)0.0302 (5)
H110.8517−0.14750.02800.036*
C121.0008 (3)−0.1431 (2)0.12337 (12)0.0302 (5)
C131.0641 (3)−0.0565 (3)0.18262 (12)0.0309 (5)
C141.0198 (3)0.0875 (3)0.18304 (14)0.0359 (5)
H141.06460.14790.22210.043*
C150.9108 (3)0.1445 (3)0.12696 (14)0.0348 (5)
H150.88180.24340.12820.042*
O41.0533 (2)−0.28329 (18)0.12628 (9)0.0386 (4)
C160.9847 (4)−0.3755 (3)0.06895 (16)0.0467 (7)
H16A0.8652−0.37850.06880.070*
H16B1.0296−0.47260.07700.070*
H16C1.0119−0.33890.02150.070*
O51.1652 (2)−0.12376 (19)0.23612 (9)0.0387 (4)
C171.2109 (4)−0.0443 (3)0.30216 (14)0.0456 (7)
H17A1.26670.04450.29030.068*
H17B1.2849−0.10260.33600.068*
H17C1.1124−0.02040.32560.068*
U11U22U33U12U13U23
O10.0552 (12)0.0343 (10)0.0526 (11)0.0138 (8)−0.0047 (9)0.0018 (8)
C10.0362 (12)0.0309 (12)0.0411 (13)0.0041 (10)0.0072 (10)0.0040 (10)
C20.0320 (12)0.0341 (12)0.0337 (11)0.0015 (9)0.0064 (9)0.0060 (9)
C30.0325 (12)0.0419 (13)0.0386 (13)0.0033 (10)0.0049 (10)0.0057 (10)
C40.0348 (13)0.0535 (16)0.0364 (12)−0.0016 (11)0.0010 (10)0.0084 (11)
C50.0385 (13)0.0535 (16)0.0310 (12)−0.0045 (12)−0.0021 (10)−0.0052 (11)
C60.0367 (13)0.0341 (12)0.0387 (12)0.0027 (10)0.0032 (10)−0.0021 (10)
C70.0275 (11)0.0383 (12)0.0284 (10)−0.0015 (9)0.0024 (8)0.0025 (9)
O20.0334 (9)0.0288 (8)0.0338 (8)0.0034 (6)−0.0010 (7)−0.0029 (6)
C80.0288 (11)0.0274 (11)0.0323 (11)0.0008 (8)0.0043 (9)−0.0005 (8)
C90.0352 (12)0.0279 (11)0.0355 (12)0.0019 (9)0.0047 (9)−0.0007 (9)
O30.0531 (12)0.0278 (9)0.0499 (11)0.0098 (8)−0.0076 (9)−0.0076 (8)
C100.0287 (11)0.0295 (11)0.0319 (11)0.0007 (9)0.0056 (9)−0.0028 (9)
C110.0295 (11)0.0306 (11)0.0305 (11)0.0011 (9)0.0033 (9)−0.0020 (9)
C120.0307 (11)0.0290 (11)0.0304 (11)0.0017 (9)0.0019 (9)−0.0008 (9)
C130.0289 (11)0.0325 (12)0.0312 (11)−0.0004 (9)0.0025 (9)−0.0036 (9)
C140.0362 (12)0.0346 (12)0.0366 (12)−0.0012 (10)0.0020 (10)−0.0068 (10)
C150.0348 (12)0.0293 (11)0.0392 (12)0.0016 (9)−0.0010 (10)−0.0033 (9)
O40.0478 (10)0.0286 (9)0.0364 (9)0.0067 (7)−0.0086 (7)−0.0043 (7)
C160.0587 (17)0.0295 (12)0.0469 (15)0.0069 (12)−0.0167 (13)−0.0093 (11)
O50.0425 (10)0.0384 (9)0.0321 (8)0.0018 (8)−0.0089 (7)−0.0028 (7)
C170.0534 (16)0.0455 (15)0.0351 (13)−0.0058 (12)−0.0086 (11)−0.0064 (11)
O1—C11.250 (3)C10—C151.392 (3)
C1—C91.437 (3)C10—C111.418 (3)
C1—C21.447 (4)C11—C121.370 (3)
C2—C71.388 (3)C11—H110.9500
C2—C31.398 (3)C12—O41.371 (3)
C3—C41.371 (4)C12—C131.401 (3)
C3—H30.9500C13—O51.362 (3)
C4—C51.397 (4)C13—C141.387 (3)
C4—H40.9500C14—C151.388 (3)
C5—C61.381 (3)C14—H140.9500
C5—H50.9500C15—H150.9500
C6—C71.388 (3)O4—C161.420 (3)
C6—H60.9500C16—H16A0.9800
C7—O21.359 (3)C16—H16B0.9800
O2—C81.370 (3)C16—H16C0.9800
C8—C91.369 (3)O5—C171.429 (3)
C8—C101.457 (3)C17—H17A0.9800
C9—O31.356 (3)C17—H17B0.9800
O3—H3A0.8400C17—H17C0.9800
O1—C1—C9120.6 (2)C11—C10—C8118.4 (2)
O1—C1—C2122.8 (2)C12—C11—C10120.9 (2)
C9—C1—C2116.6 (2)C12—C11—H11119.6
C7—C2—C3118.5 (2)C10—C11—H11119.6
C7—C2—C1118.5 (2)C11—C12—O4124.1 (2)
C3—C2—C1123.0 (2)C11—C12—C13120.6 (2)
C4—C3—C2120.5 (2)O4—C12—C13115.3 (2)
C4—C3—H3119.7O5—C13—C14125.3 (2)
C2—C3—H3119.7O5—C13—C12115.8 (2)
C3—C4—C5120.2 (2)C14—C13—C12118.9 (2)
C3—C4—H4119.9C13—C14—C15120.8 (2)
C5—C4—H4119.9C13—C14—H14119.6
C6—C5—C4120.2 (3)C15—C14—H14119.6
C6—C5—H5119.9C14—C15—C10120.9 (2)
C4—C5—H5119.9C14—C15—H15119.6
C5—C6—C7119.0 (2)C10—C15—H15119.6
C5—C6—H6120.5C12—O4—C16116.58 (18)
C7—C6—H6120.5O4—C16—H16A109.5
O2—C7—C6116.4 (2)O4—C16—H16B109.5
O2—C7—C2122.0 (2)H16A—C16—H16B109.5
C6—C7—C2121.5 (2)O4—C16—H16C109.5
C7—O2—C8121.53 (18)H16A—C16—H16C109.5
C9—C8—O2119.4 (2)H16B—C16—H16C109.5
C9—C8—C10129.5 (2)C13—O5—C17116.8 (2)
O2—C8—C10111.13 (19)O5—C17—H17A109.5
O3—C9—C8120.2 (2)O5—C17—H17B109.5
O3—C9—C1117.8 (2)H17A—C17—H17B109.5
C8—C9—C1121.9 (2)O5—C17—H17C109.5
C9—O3—H3A109.5H17A—C17—H17C109.5
C15—C10—C11117.9 (2)H17B—C17—H17C109.5
C15—C10—C8123.7 (2)
O1—C1—C2—C7−177.7 (2)C2—C1—C9—O3179.3 (2)
C9—C1—C2—C71.8 (3)O1—C1—C9—C8179.3 (2)
O1—C1—C2—C31.5 (4)C2—C1—C9—C8−0.2 (4)
C9—C1—C2—C3−179.1 (2)C9—C8—C10—C15−5.2 (4)
C7—C2—C3—C40.5 (4)O2—C8—C10—C15176.3 (2)
C1—C2—C3—C4−178.7 (2)C9—C8—C10—C11174.2 (2)
C2—C3—C4—C50.0 (4)O2—C8—C10—C11−4.2 (3)
C3—C4—C5—C60.0 (4)C15—C10—C11—C122.0 (3)
C4—C5—C6—C7−0.5 (4)C8—C10—C11—C12−177.5 (2)
C5—C6—C7—O2−179.3 (2)C10—C11—C12—O4179.4 (2)
C5—C6—C7—C21.0 (4)C10—C11—C12—C13−0.1 (3)
C3—C2—C7—O2179.3 (2)C11—C12—C13—O5177.7 (2)
C1—C2—C7—O2−1.5 (3)O4—C12—C13—O5−1.8 (3)
C3—C2—C7—C6−1.0 (4)C11—C12—C13—C14−1.8 (3)
C1—C2—C7—C6178.2 (2)O4—C12—C13—C14178.6 (2)
C6—C7—O2—C8179.8 (2)O5—C13—C14—C15−177.6 (2)
C2—C7—O2—C8−0.5 (3)C12—C13—C14—C151.9 (4)
C7—O2—C8—C92.1 (3)C13—C14—C15—C10−0.1 (4)
C7—O2—C8—C10−179.22 (19)C11—C10—C15—C14−1.9 (4)
O2—C8—C9—O3178.8 (2)C8—C10—C15—C14177.6 (2)
C10—C8—C9—O30.5 (4)C11—C12—O4—C16−2.7 (4)
O2—C8—C9—C1−1.8 (4)C13—C12—O4—C16176.9 (2)
C10—C8—C9—C1179.9 (2)C14—C13—O5—C178.9 (3)
O1—C1—C9—O3−1.3 (4)C12—C13—O5—C17−170.6 (2)
D—H···AD—HH···AD···AD—H···A
O3—H3A···O10.842.262.710 (3)113
O3—H3A···O1i0.841.962.719 (3)150
C17—H17A···O4ii0.982.563.283 (3)130
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3A⋯O10.842.262.710 (3)113
O3—H3A⋯O1i 0.841.962.719 (3)150
C17—H17A⋯O4ii 0.982.563.283 (3)130

Symmetry codes: (i) ; (ii) .

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