Literature DB >> 25309268

Crystal structure of 1,3-dimethyl-3-phenyl-pyrrolidine-2,5-dione: a clinically used anti-convulsant.

Carlos Ordonez1, Ilia M Pavlovetc2, Victor N Khrustalev3.   

Abstract

In the title compound, C12H13NO2, the five-membered ring has an envelope conformation; the disubstituted C atom lies out of the mean plane through the four other ring atoms (r.m.s. deviation = 0.0038 Å) by 0.1877 (18) Å. The plane of the phenyl substituent is practically perpendicular to that of the planar part of the five-membered ring, with a dihedral angle of 87.01 (5)°. In the crystal, mol-ecules are linked by weak C-H⋯O hydrogen bonds, forming inversion dimers. The dimers are linked by further C-H⋯O hydrogen bonds, as well as carbon-yl-carbonyl attractive inter-actions [O⋯C = 3.2879 (19) Å], forming a three-dimensional framework structure.

Entities:  

Keywords:  anti­convulsant; crystal structure; methsuximide; succinimide; α-substituted cyclic imide

Year:  2014        PMID: 25309268      PMCID: PMC4186160          DOI: 10.1107/S1600536814016717

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to the properties of α-substituted cyclic imides, see: Chen et al. (1951 ▶, 2014 ▶); Vida & Gerry (1977 ▶); Kuhnert-Brandstätter & Bösch (1978 ▶); Sigler et al. (2001 ▶); Lin et al. (2012 ▶). For the crystal structures of some succinimide derivatives, see: Argay & Carstensen-Oeser (1973 ▶); Argay & Kálmán (1973 ▶); Argay & Seres (1973 ▶); Kwiatkowski & Karolak-Wojciechowska (1992 ▶); Khrustalev et al. (2014 ▶). For carbon­yl–carbonyl inter­actions, see: Allen et al. (1998 ▶).

Experimental

Crystal data

C12H13NO2 M = 203.23 Monoclinic, a = 10.517 (5) Å b = 7.383 (3) Å c = 13.568 (6) Å β = 102.332 (6)° V = 1029.2 (8) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 100 K 0.45 × 0.35 × 0.25 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.961, T max = 0.978 11948 measured reflections 3170 independent reflections 2401 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.117 S = 1.04 3170 reflections 138 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.20 e Å−3

Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814016717/su2755sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814016717/su2755Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814016717/su2755Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814016717/su2755fig1.tif Mol­ecular structure of the title mol­ecule, with atom labelling. Displacement ellipsoids are drawn at the 50% probability level. Click here for additional data file. . DOI: 10.1107/S1600536814016717/su2755fig2.tif A view along the b axis of the crystal packing of the title compound. The C–H⋯O hydrogen bonds (see Table 1 for details) and attractive C=O⋯C=O inter­actions are shown as dashed lines. CCDC reference: 1015037 Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H13NO2F(000) = 432
Mr = 203.23Dx = 1.312 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2487 reflections
a = 10.517 (5) Åθ = 4.3–30.4°
b = 7.383 (3) ŵ = 0.09 mm1
c = 13.568 (6) ÅT = 100 K
β = 102.332 (6)°Prism, colourless
V = 1029.2 (8) Å30.45 × 0.35 × 0.25 mm
Z = 4
Bruker SMART APEXII CCD area-detector diffractometer3170 independent reflections
Radiation source: fine-focus sealed tube2401 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.039
φ and ω scansθmax = 30.7°, θmin = 4.3°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −14→15
Tmin = 0.961, Tmax = 0.978k = −10→10
11948 measured reflectionsl = −19→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.051P)2 + 0.2557P] where P = (Fo2 + 2Fc2)/3
3170 reflections(Δ/σ)max < 0.001
138 parametersΔρmax = 0.31 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.22108 (8)0.49025 (12)0.54547 (6)0.0254 (2)
O20.05261 (9)−0.03777 (14)0.63342 (7)0.0329 (2)
N10.12281 (9)0.24733 (15)0.60341 (7)0.0230 (2)
C20.21177 (11)0.32854 (16)0.55604 (8)0.0197 (2)
C30.29566 (11)0.18081 (15)0.52209 (8)0.0178 (2)
C40.22286 (11)0.00564 (16)0.53825 (9)0.0213 (2)
H4A0.1797−0.04760.47260.026*
H4B0.2840−0.08460.57610.026*
C50.12347 (11)0.06034 (18)0.59769 (8)0.0232 (2)
C60.03228 (12)0.3509 (2)0.64901 (10)0.0320 (3)
H6A0.07820.45300.68700.048*
H6B−0.00350.27260.69480.048*
H6C−0.03870.39670.59600.048*
C70.43011 (10)0.19242 (14)0.59288 (8)0.0165 (2)
C80.53672 (11)0.26871 (15)0.56295 (9)0.0207 (2)
H80.52730.31410.49630.025*
C90.65706 (11)0.27933 (16)0.62961 (10)0.0236 (3)
H90.72880.33230.60810.028*
C100.67313 (12)0.21356 (16)0.72690 (10)0.0233 (2)
H100.75580.21940.77180.028*
C110.56728 (11)0.13896 (16)0.75822 (9)0.0214 (2)
H110.57720.09400.82500.026*
C120.44715 (11)0.12992 (15)0.69216 (8)0.0186 (2)
H120.37500.08030.71470.022*
C130.29842 (13)0.21253 (17)0.41107 (9)0.0240 (3)
H13A0.33020.33520.40270.036*
H13B0.21040.19880.36970.036*
H13C0.35640.12390.38970.036*
U11U22U33U12U13U23
O10.0279 (5)0.0234 (4)0.0231 (4)0.0064 (3)0.0012 (3)−0.0014 (3)
O20.0212 (4)0.0458 (6)0.0329 (5)−0.0032 (4)0.0084 (4)0.0098 (4)
N10.0173 (5)0.0324 (6)0.0196 (5)0.0046 (4)0.0046 (4)0.0000 (4)
C20.0172 (5)0.0258 (6)0.0147 (5)0.0035 (4)0.0002 (4)0.0000 (4)
C30.0188 (5)0.0192 (5)0.0159 (5)0.0011 (4)0.0047 (4)0.0008 (4)
C40.0189 (5)0.0236 (6)0.0214 (5)−0.0023 (4)0.0041 (4)−0.0010 (4)
C50.0160 (5)0.0340 (6)0.0186 (5)−0.0003 (4)0.0016 (4)0.0034 (5)
C60.0210 (6)0.0474 (8)0.0292 (6)0.0099 (5)0.0086 (5)−0.0032 (6)
C70.0173 (5)0.0153 (5)0.0179 (5)0.0017 (4)0.0058 (4)−0.0001 (4)
C80.0221 (6)0.0193 (5)0.0232 (5)0.0014 (4)0.0102 (4)0.0031 (4)
C90.0186 (5)0.0186 (5)0.0358 (7)−0.0012 (4)0.0113 (5)−0.0025 (5)
C100.0193 (5)0.0196 (5)0.0295 (6)0.0026 (4)0.0023 (4)−0.0066 (4)
C110.0232 (6)0.0215 (5)0.0189 (5)0.0034 (4)0.0033 (4)−0.0015 (4)
C120.0190 (5)0.0183 (5)0.0195 (5)−0.0002 (4)0.0061 (4)0.0000 (4)
C130.0316 (6)0.0249 (6)0.0158 (5)0.0015 (5)0.0061 (5)0.0000 (4)
O1—C21.2089 (15)C7—C81.3907 (16)
O2—C51.2122 (15)C7—C121.3987 (16)
N1—C21.3802 (15)C8—C91.3918 (18)
N1—C51.3828 (18)C8—H80.9500
N1—C61.4580 (16)C9—C101.3826 (19)
C2—C31.5342 (16)C9—H90.9500
C3—C131.5308 (17)C10—C111.3876 (17)
C3—C71.5328 (16)C10—H100.9500
C3—C41.5422 (16)C11—C121.3859 (16)
C4—C51.5055 (17)C11—H110.9500
C4—H4A0.9900C12—H120.9500
C4—H4B0.9900C13—H13A0.9800
C6—H6A0.9800C13—H13B0.9800
C6—H6B0.9800C13—H13C0.9800
C6—H6C0.9800
C2—N1—C5113.30 (10)H6B—C6—H6C109.5
C2—N1—C6122.61 (11)C8—C7—C12118.00 (10)
C5—N1—C6123.98 (11)C8—C7—C3122.21 (10)
O1—C2—N1124.36 (11)C12—C7—C3119.76 (10)
O1—C2—C3126.88 (11)C7—C8—C9120.73 (11)
N1—C2—C3108.76 (10)C7—C8—H8119.6
C13—C3—C7113.53 (9)C9—C8—H8119.6
C13—C3—C2108.64 (9)C10—C9—C8120.63 (11)
C7—C3—C2106.55 (9)C10—C9—H9119.7
C13—C3—C4112.49 (9)C8—C9—H9119.7
C7—C3—C4112.17 (9)C9—C10—C11119.29 (11)
C2—C3—C4102.63 (9)C9—C10—H10120.4
C5—C4—C3105.90 (10)C11—C10—H10120.4
C5—C4—H4A110.6C12—C11—C10120.09 (11)
C3—C4—H4A110.6C12—C11—H11120.0
C5—C4—H4B110.6C10—C11—H11120.0
C3—C4—H4B110.6C11—C12—C7121.24 (10)
H4A—C4—H4B108.7C11—C12—H12119.4
O2—C5—N1124.28 (12)C7—C12—H12119.4
O2—C5—C4127.63 (12)C3—C13—H13A109.5
N1—C5—C4108.07 (10)C3—C13—H13B109.5
N1—C6—H6A109.5H13A—C13—H13B109.5
N1—C6—H6B109.5C3—C13—H13C109.5
H6A—C6—H6B109.5H13A—C13—H13C109.5
N1—C6—H6C109.5H13B—C13—H13C109.5
H6A—C6—H6C109.5
C5—N1—C2—O1174.37 (10)C3—C4—C5—O2−173.64 (11)
C6—N1—C2—O1−2.00 (17)C3—C4—C5—N17.94 (12)
C5—N1—C2—C3−6.64 (13)C13—C3—C7—C815.33 (15)
C6—N1—C2—C3176.99 (10)C2—C3—C7—C8−104.22 (12)
O1—C2—C3—C13−50.84 (15)C4—C3—C7—C8144.23 (10)
N1—C2—C3—C13130.20 (10)C13—C3—C7—C12−166.67 (10)
O1—C2—C3—C771.83 (14)C2—C3—C7—C1273.78 (12)
N1—C2—C3—C7−107.13 (10)C4—C3—C7—C12−37.77 (13)
O1—C2—C3—C4−170.14 (11)C12—C7—C8—C91.08 (16)
N1—C2—C3—C410.91 (11)C3—C7—C8—C9179.11 (10)
C13—C3—C4—C5−127.64 (10)C7—C8—C9—C100.25 (17)
C7—C3—C4—C5102.92 (10)C8—C9—C10—C11−0.98 (17)
C2—C3—C4—C5−11.07 (11)C9—C10—C11—C120.36 (17)
C2—N1—C5—O2−179.41 (11)C10—C11—C12—C71.00 (17)
C6—N1—C5—O2−3.10 (18)C8—C7—C12—C11−1.70 (16)
C2—N1—C5—C4−0.93 (13)C3—C7—C12—C11−179.79 (10)
C6—N1—C5—C4175.39 (10)
D—H···AD—HH···AD···AD—H···A
C6—H6C···O1i0.982.553.5264 (19)178
C11—H11···O1ii0.952.573.2744 (17)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C6—H6C⋯O1i 0.982.553.5264 (19)178
C11—H11⋯O1ii 0.952.573.2744 (17)132

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The anticonvulsant activity of o-phenyl succinimides.

Authors:  G CHEN; R PORTMAN; C R ENSOR; A C BRATTON
Journal:  J Pharmacol Exp Ther       Date:  1951-09       Impact factor: 4.030

3.  Effective and safe but forgotten: methsuximide in intractable epilepsies in childhood.

Authors:  M Sigler; H M Strassburg; H E Boenigk
Journal:  Seizure       Date:  2001-03       Impact factor: 3.184

4.  [On the polymorphism of drugs: medrogestone, phensuximide and protionamide (author's transl)].

Authors:  M Kuhnert-Brandstätter; L Bösch
Journal:  Arch Pharm (Weinheim)       Date:  1978-09       Impact factor: 3.751

  4 in total

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