| Literature DB >> 25309266 |
Seonghwa Cho1, Jineun Kim1, Youngeun Jeon1, Tae Ho Kim1.
Abstract
In the title compound {systematic name: 2-[(3,5,6-tri-chloro-pyridin-2-yl)-oxy]acetic acid}, the herbicide triclopyr, C7H4Cl3NO3, the asymmetric unit comprises two independent mol-ecules in which the dihedral angles between the mean plane of the carb-oxy-lic acid group and the pyridyl ring plane are 79.3 (6) and 83.8 (5)°. In the crystal, pairs of inter-molecular O-H⋯O hydrogen bonds form dimers through an R 2 (2)(8) ring motif and are extended into chains along [100] by weak π-π inter-actions [ring centroid separations = 3.799 (4) and 3.810 (4) Å]. In addition, short inter-molecular Cl⋯Cl contacts [3.458 (2) Å] connect the chains, yielding a two-dimensional architecture extending parallel to (020). The crystal studied was found to be non-merohedrally twinned with the minor component being 0.175 (4).Entities:
Keywords: crystal structure; herbicide; hydrogen-bonded dimers; non-merohedral twinning; triclopyr; π–π interactions
Year: 2014 PMID: 25309266 PMCID: PMC4186132 DOI: 10.1107/S160053681401681X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H4Cl3NO3 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 3761 reflections |
| θ = 2.2–25.5° | |
| µ = 0.95 mm−1 | |
| β = 106.261 (8)° | Needle, colourless |
| 0.50 × 0.09 × 0.06 mm | |
| Bruker APEXII CCD diffractometer | 3699 independent reflections |
| Radiation source: fine-focus sealed tube | 3080 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 26.0°, θmin = 1.6° |
| Absorption correction: multi-scan ( | |
| 3699 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3699 reflections | (Δ/σ)max = 0.001 |
| 256 parameters | Δρmax = 0.32 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.66278 (13) | 0.53311 (3) | 0.94222 (8) | 0.0336 (2) | |
| Cl2 | 0.86627 (14) | 0.62564 (3) | 1.13208 (9) | 0.0397 (2) | |
| Cl3 | 0.67175 (14) | 0.75251 (3) | 0.69082 (10) | 0.0408 (2) | |
| Cl4 | 1.00995 (14) | 0.31553 (3) | 0.50221 (9) | 0.0380 (2) | |
| Cl5 | 0.79593 (15) | 0.23214 (3) | 0.28102 (10) | 0.0432 (3) | |
| Cl6 | 0.66657 (14) | 0.38875 (3) | −0.09150 (8) | 0.0403 (2) | |
| O1 | 0.4722 (3) | 0.65825 (8) | 0.5624 (2) | 0.0317 (5) | |
| O2 | 0.6886 (3) | 0.58941 (10) | 0.4787 (3) | 0.0386 (6) | |
| O3 | 0.4491 (3) | 0.53970 (9) | 0.3695 (3) | 0.0382 (6) | |
| H3O | 0.5290 | 0.5231 | 0.3434 | 0.057* | |
| O4 | 0.9075 (3) | 0.44645 (8) | 0.1341 (2) | 0.0315 (5) | |
| O5 | 0.9552 (3) | 0.54570 (9) | 0.3905 (2) | 0.0316 (5) | |
| H5O | 0.8784 | 0.5599 | 0.4250 | 0.047* | |
| O6 | 0.7219 (3) | 0.49064 (9) | 0.2971 (3) | 0.0361 (6) | |
| N1 | 0.5733 (4) | 0.60258 (10) | 0.7479 (3) | 0.0248 (6) | |
| N2 | 0.9432 (4) | 0.38215 (10) | 0.3000 (3) | 0.0258 (6) | |
| C1 | 0.6641 (4) | 0.59584 (11) | 0.8776 (3) | 0.0242 (7) | |
| C2 | 0.7565 (5) | 0.63593 (12) | 0.9613 (3) | 0.0267 (7) | |
| C3 | 0.7598 (5) | 0.68502 (11) | 0.9024 (3) | 0.0278 (7) | |
| H3 | 0.8254 | 0.7133 | 0.9552 | 0.033* | |
| C4 | 0.6673 (5) | 0.69213 (11) | 0.7674 (3) | 0.0254 (7) | |
| C5 | 0.5714 (4) | 0.64974 (12) | 0.6938 (3) | 0.0241 (7) | |
| C6 | 0.3859 (5) | 0.61313 (13) | 0.4863 (3) | 0.0331 (8) | |
| H6A | 0.2905 | 0.6247 | 0.4032 | 0.040* | |
| H6B | 0.3251 | 0.5920 | 0.5430 | 0.040* | |
| C7 | 0.5265 (5) | 0.57983 (12) | 0.4455 (3) | 0.0283 (7) | |
| C8 | 0.9176 (5) | 0.33276 (12) | 0.3324 (3) | 0.0266 (7) | |
| C9 | 0.8219 (5) | 0.29661 (12) | 0.2378 (3) | 0.0276 (7) | |
| C10 | 0.7423 (5) | 0.31367 (12) | 0.1045 (3) | 0.0279 (7) | |
| H10 | 0.6717 | 0.2901 | 0.0376 | 0.033* | |
| C11 | 0.7668 (5) | 0.36496 (12) | 0.0706 (3) | 0.0266 (7) | |
| C12 | 0.8738 (4) | 0.39780 (11) | 0.1722 (3) | 0.0255 (7) | |
| C13 | 1.0054 (5) | 0.48192 (12) | 0.2385 (3) | 0.0301 (8) | |
| H13A | 1.0624 | 0.5100 | 0.1967 | 0.036* | |
| H13B | 1.1048 | 0.4627 | 0.3053 | 0.036* | |
| C14 | 0.8768 (5) | 0.50619 (12) | 0.3117 (3) | 0.0269 (7) |
| Cl1 | 0.0447 (5) | 0.0215 (4) | 0.0343 (4) | −0.0055 (4) | 0.0106 (4) | 0.0039 (3) |
| Cl2 | 0.0511 (6) | 0.0334 (4) | 0.0276 (4) | −0.0038 (4) | −0.0006 (4) | 0.0000 (3) |
| Cl3 | 0.0532 (6) | 0.0246 (4) | 0.0453 (5) | −0.0031 (4) | 0.0153 (5) | 0.0085 (4) |
| Cl4 | 0.0483 (6) | 0.0327 (4) | 0.0293 (4) | 0.0081 (4) | 0.0048 (4) | 0.0055 (3) |
| Cl5 | 0.0617 (7) | 0.0248 (4) | 0.0466 (5) | −0.0052 (4) | 0.0210 (5) | 0.0019 (4) |
| Cl6 | 0.0517 (6) | 0.0405 (5) | 0.0244 (4) | 0.0102 (4) | 0.0035 (4) | 0.0000 (3) |
| O1 | 0.0372 (14) | 0.0290 (12) | 0.0261 (12) | 0.0025 (11) | 0.0044 (11) | −0.0002 (9) |
| O2 | 0.0295 (15) | 0.0436 (14) | 0.0423 (15) | −0.0027 (12) | 0.0092 (12) | −0.0138 (11) |
| O3 | 0.0304 (14) | 0.0387 (14) | 0.0430 (15) | −0.0022 (12) | 0.0064 (12) | −0.0143 (11) |
| O4 | 0.0415 (15) | 0.0223 (11) | 0.0290 (12) | 0.0005 (10) | 0.0072 (11) | 0.0008 (9) |
| O5 | 0.0290 (13) | 0.0293 (12) | 0.0355 (13) | −0.0032 (11) | 0.0074 (11) | −0.0063 (10) |
| O6 | 0.0315 (15) | 0.0296 (12) | 0.0471 (15) | −0.0033 (11) | 0.0110 (12) | −0.0094 (11) |
| N1 | 0.0244 (15) | 0.0246 (13) | 0.0270 (14) | −0.0031 (12) | 0.0098 (12) | −0.0019 (11) |
| N2 | 0.0274 (16) | 0.0230 (13) | 0.0253 (14) | 0.0030 (12) | 0.0044 (12) | −0.0023 (11) |
| C1 | 0.0277 (18) | 0.0185 (14) | 0.0297 (17) | −0.0006 (13) | 0.0136 (15) | 0.0012 (12) |
| C2 | 0.0278 (19) | 0.0281 (16) | 0.0238 (16) | −0.0001 (14) | 0.0066 (14) | −0.0012 (13) |
| C3 | 0.033 (2) | 0.0186 (15) | 0.0332 (18) | −0.0043 (14) | 0.0117 (16) | −0.0043 (13) |
| C4 | 0.0314 (19) | 0.0181 (14) | 0.0301 (17) | 0.0001 (14) | 0.0141 (15) | 0.0033 (12) |
| C5 | 0.0248 (18) | 0.0252 (16) | 0.0244 (16) | 0.0021 (13) | 0.0105 (14) | −0.0001 (12) |
| C6 | 0.031 (2) | 0.0383 (19) | 0.0274 (18) | 0.0025 (16) | 0.0038 (16) | −0.0071 (14) |
| C7 | 0.034 (2) | 0.0296 (17) | 0.0194 (16) | 0.0003 (15) | 0.0038 (15) | 0.0009 (13) |
| C8 | 0.0269 (19) | 0.0256 (16) | 0.0279 (17) | 0.0085 (14) | 0.0089 (15) | 0.0038 (13) |
| C9 | 0.0301 (19) | 0.0227 (15) | 0.0331 (18) | 0.0020 (14) | 0.0138 (16) | 0.0015 (13) |
| C10 | 0.0268 (19) | 0.0272 (16) | 0.0305 (18) | −0.0004 (14) | 0.0096 (15) | −0.0083 (13) |
| C11 | 0.0265 (18) | 0.0297 (16) | 0.0235 (16) | 0.0066 (15) | 0.0069 (15) | −0.0018 (13) |
| C12 | 0.0252 (18) | 0.0210 (15) | 0.0322 (18) | 0.0063 (14) | 0.0113 (15) | −0.0021 (13) |
| C13 | 0.032 (2) | 0.0223 (15) | 0.0353 (19) | −0.0010 (14) | 0.0080 (16) | −0.0012 (14) |
| C14 | 0.031 (2) | 0.0197 (15) | 0.0267 (17) | 0.0019 (15) | 0.0028 (15) | 0.0028 (13) |
| Cl1—C1 | 1.725 (3) | N2—C12 | 1.319 (4) |
| Cl2—C2 | 1.722 (3) | N2—C8 | 1.325 (4) |
| Cl3—C4 | 1.725 (3) | C1—C2 | 1.385 (4) |
| Cl4—C8 | 1.728 (3) | C2—C3 | 1.387 (4) |
| Cl5—C9 | 1.721 (3) | C3—C4 | 1.367 (4) |
| Cl6—C11 | 1.720 (3) | C3—H3 | 0.9500 |
| O1—C5 | 1.354 (4) | C4—C5 | 1.394 (4) |
| O1—C6 | 1.434 (4) | C6—C7 | 1.507 (5) |
| O2—C7 | 1.204 (4) | C6—H6A | 0.9900 |
| O3—C7 | 1.314 (4) | C6—H6B | 0.9900 |
| O3—H3O | 0.8400 | C8—C9 | 1.379 (4) |
| O4—C12 | 1.341 (4) | C9—C10 | 1.389 (4) |
| O4—C13 | 1.431 (4) | C10—C11 | 1.374 (4) |
| O5—C14 | 1.318 (4) | C10—H10 | 0.9500 |
| O5—H5O | 0.8400 | C11—C12 | 1.397 (4) |
| O6—C14 | 1.208 (4) | C13—C14 | 1.513 (5) |
| N1—C1 | 1.317 (4) | C13—H13A | 0.9900 |
| N1—C5 | 1.317 (4) | C13—H13B | 0.9900 |
| C5—O1—C6 | 116.6 (2) | O2—C7—O3 | 125.0 (3) |
| C7—O3—H3O | 109.5 | O2—C7—C6 | 123.6 (3) |
| C12—O4—C13 | 117.9 (2) | O3—C7—C6 | 111.3 (3) |
| C14—O5—H5O | 109.5 | N2—C8—C9 | 122.8 (3) |
| C1—N1—C5 | 118.6 (3) | N2—C8—Cl4 | 116.2 (2) |
| C12—N2—C8 | 119.0 (3) | C9—C8—Cl4 | 120.9 (2) |
| N1—C1—C2 | 123.5 (3) | C8—C9—C10 | 118.1 (3) |
| N1—C1—Cl1 | 116.4 (2) | C8—C9—Cl5 | 122.1 (3) |
| C2—C1—Cl1 | 120.1 (2) | C10—C9—Cl5 | 119.7 (2) |
| C1—C2—C3 | 117.6 (3) | C11—C10—C9 | 119.3 (3) |
| C1—C2—Cl2 | 121.7 (2) | C11—C10—H10 | 120.4 |
| C3—C2—Cl2 | 120.7 (2) | C9—C10—H10 | 120.4 |
| C4—C3—C2 | 119.1 (3) | C10—C11—C12 | 118.1 (3) |
| C4—C3—H3 | 120.5 | C10—C11—Cl6 | 121.3 (3) |
| C2—C3—H3 | 120.5 | C12—C11—Cl6 | 120.5 (2) |
| C3—C4—C5 | 118.7 (3) | N2—C12—O4 | 120.4 (3) |
| C3—C4—Cl3 | 120.1 (2) | N2—C12—C11 | 122.5 (3) |
| C5—C4—Cl3 | 121.2 (2) | O4—C12—C11 | 117.0 (3) |
| N1—C5—O1 | 119.7 (3) | O4—C13—C14 | 110.5 (3) |
| N1—C5—C4 | 122.4 (3) | O4—C13—H13A | 109.6 |
| O1—C5—C4 | 117.9 (3) | C14—C13—H13A | 109.6 |
| O1—C6—C7 | 110.3 (3) | O4—C13—H13B | 109.6 |
| O1—C6—H6A | 109.6 | C14—C13—H13B | 109.6 |
| C7—C6—H6A | 109.6 | H13A—C13—H13B | 108.1 |
| O1—C6—H6B | 109.6 | O6—C14—O5 | 125.5 (3) |
| C7—C6—H6B | 109.6 | O6—C14—C13 | 122.9 (3) |
| H6A—C6—H6B | 108.1 | O5—C14—C13 | 111.5 (3) |
| C5—N1—C1—C2 | 0.8 (5) | C12—N2—C8—C9 | 0.3 (5) |
| C5—N1—C1—Cl1 | −179.5 (2) | C12—N2—C8—Cl4 | −179.1 (2) |
| N1—C1—C2—C3 | −3.1 (5) | N2—C8—C9—C10 | −3.0 (5) |
| Cl1—C1—C2—C3 | 177.2 (2) | Cl4—C8—C9—C10 | 176.4 (2) |
| N1—C1—C2—Cl2 | 177.6 (3) | N2—C8—C9—Cl5 | 178.1 (3) |
| Cl1—C1—C2—Cl2 | −2.1 (4) | Cl4—C8—C9—Cl5 | −2.5 (4) |
| C1—C2—C3—C4 | 2.3 (5) | C8—C9—C10—C11 | 2.3 (5) |
| Cl2—C2—C3—C4 | −178.4 (3) | Cl5—C9—C10—C11 | −178.8 (3) |
| C2—C3—C4—C5 | 0.5 (5) | C9—C10—C11—C12 | 0.8 (5) |
| C2—C3—C4—Cl3 | −179.1 (3) | C9—C10—C11—Cl6 | −178.3 (2) |
| C1—N1—C5—O1 | −177.0 (3) | C8—N2—C12—O4 | −175.5 (3) |
| C1—N1—C5—C4 | 2.3 (5) | C8—N2—C12—C11 | 3.1 (5) |
| C6—O1—C5—N1 | −4.9 (4) | C13—O4—C12—N2 | −5.8 (4) |
| C6—O1—C5—C4 | 175.7 (3) | C13—O4—C12—C11 | 175.5 (3) |
| C3—C4—C5—N1 | −3.0 (5) | C10—C11—C12—N2 | −3.6 (5) |
| Cl3—C4—C5—N1 | 176.6 (2) | Cl6—C11—C12—N2 | 175.5 (2) |
| C3—C4—C5—O1 | 176.4 (3) | C10—C11—C12—O4 | 175.0 (3) |
| Cl3—C4—C5—O1 | −4.1 (4) | Cl6—C11—C12—O4 | −5.9 (4) |
| C5—O1—C6—C7 | −75.3 (3) | C12—O4—C13—C14 | −80.9 (3) |
| O1—C6—C7—O2 | 3.1 (5) | O4—C13—C14—O6 | 11.0 (4) |
| O1—C6—C7—O3 | −176.7 (3) | O4—C13—C14—O5 | −168.6 (2) |
| H··· | ||||
| O3—H3 | 0.84 | 1.85 | 2.688 (3) | 174 |
| O5—H5 | 0.84 | 1.84 | 2.671 (3) | 172 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H3 | 0.84 | 1.85 | 2.688 (3) | 174 |
| O5—H5 | 0.84 | 1.84 | 2.671 (3) | 172 |