| Literature DB >> 25309250 |
Syadza Firdausiah1, Ameera Aqeela Salleh Huddin1, Siti Aishah Hasbullah1, Bohari M Yamin1, Siti Fairus M Yusoff1.
Abstract
In the title compound, C15H11F2N3O2S, the dihedral angle between the fluoro-benzene rings is 88.43 (10)° and that between the central semithiocarbazide grouping is 47.00 (11)°. The dihedral angle between the amide group and attached fluoro-benzene ring is 50.52 (11)°; the equivalent angle between the carbonyl-thio-amide group and its attached ring is 12.98 (10)°. The major twists in the mol-ecule occur about the C-N-N-C bonds [torsion angle = -138.7 (2)°] and the Car-Car-C-N (ar = aromatic) bonds [-132.0 (2)°]. An intra-molecular N-H⋯O hydrogen bond occurs, which generates an S(6) ring. In the crystal, the mol-ecules are linked by N-H⋯O and N-H⋯S hydrogen bonds, generating (001) sheets. Weak C-H⋯O and C-H⋯F inter-actions are also observed.Entities:
Keywords: crystal structure; hydrogen bonds; semithiocarbazide
Year: 2014 PMID: 25309250 PMCID: PMC4186173 DOI: 10.1107/S1600536814015761
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C15H11F2N3O2S | |
| Orthorhombic, | |
| Hall symbol: -P 2ac 2ab | Mo |
| µ = 0.26 mm−1 | |
| Block, colorless | |
| 0.50 × 0.12 × 0.08 mm |
| Bruker SMART APEX CCD diffractometer | 2886 independent reflections |
| Radiation source: fine-focus sealed tube | 2024 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 26.0°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 76830 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2886 reflections | (Δ/σ)max = 0.001 |
| 208 parameters | Δρmax = 0.27 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| S1 | 0.98887 (5) | 0.15863 (8) | 0.73680 (2) | 0.04054 (19) | |
| O1 | 0.69608 (15) | 0.4074 (2) | 0.80598 (6) | 0.0585 (6) | |
| O2 | 0.64343 (13) | 0.34844 (18) | 0.67414 (5) | 0.0328 (4) | |
| N1 | 0.88035 (15) | 0.3239 (2) | 0.79937 (6) | 0.0283 (4) | |
| H1A | 0.9472 | 0.3290 | 0.8116 | 0.034* | |
| N2 | 0.76928 (15) | 0.2357 (2) | 0.74100 (6) | 0.0308 (5) | |
| H2A | 0.7137 | 0.2871 | 0.7533 | 0.037* | |
| N3 | 0.74823 (15) | 0.1473 (2) | 0.70307 (5) | 0.0278 (4) | |
| H3 | 0.7784 | 0.0548 | 0.6995 | 0.033* | |
| C1 | 0.7245 (2) | 0.5302 (3) | 0.88928 (8) | 0.0444 (7) | |
| H1 | 0.6558 | 0.5469 | 0.8741 | 0.053* | |
| C2 | 0.7347 (2) | 0.5802 (3) | 0.93299 (8) | 0.0511 (7) | |
| H2 | 0.6738 | 0.6303 | 0.9474 | 0.061* | |
| C3 | 0.8362 (2) | 0.5540 (3) | 0.95425 (8) | 0.0430 (7) | |
| C4 | 0.9276 (2) | 0.4826 (3) | 0.93441 (8) | 0.0479 (7) | |
| H4 | 0.9959 | 0.4667 | 0.9500 | 0.057* | |
| C5 | 0.9171 (2) | 0.4339 (3) | 0.89050 (8) | 0.0402 (6) | |
| H5 | 0.9792 | 0.3861 | 0.8762 | 0.048* | |
| C6 | 0.81520 (19) | 0.4557 (3) | 0.86779 (7) | 0.0300 (5) | |
| C7 | 0.79209 (19) | 0.3964 (3) | 0.82191 (7) | 0.0315 (5) | |
| C8 | 0.87407 (18) | 0.2428 (3) | 0.75895 (7) | 0.0258 (5) | |
| C9 | 0.67935 (17) | 0.2104 (3) | 0.67201 (7) | 0.0254 (5) | |
| C10 | 0.64585 (18) | 0.1018 (3) | 0.63505 (7) | 0.0263 (5) | |
| C11 | 0.6553 (2) | 0.1549 (3) | 0.59144 (7) | 0.0383 (6) | |
| H11 | 0.6838 | 0.2563 | 0.5858 | 0.046* | |
| C12 | 0.6228 (2) | 0.0589 (3) | 0.55647 (8) | 0.0481 (7) | |
| H12 | 0.6300 | 0.0931 | 0.5271 | 0.058* | |
| C13 | 0.5797 (2) | −0.0878 (3) | 0.56616 (9) | 0.0503 (7) | |
| C15 | 0.6004 (2) | −0.0473 (3) | 0.64350 (8) | 0.0360 (6) | |
| H15 | 0.5929 | −0.0828 | 0.6727 | 0.043* | |
| F1 | 0.84583 (15) | 0.6012 (2) | 0.99733 (5) | 0.0681 (5) | |
| F2 | 0.54797 (19) | −0.1828 (2) | 0.53146 (6) | 0.0870 (7) | |
| C14 | 0.5660 (2) | −0.1434 (3) | 0.60860 (9) | 0.0491 (7) | |
| H14 | 0.5344 | −0.2433 | 0.6139 | 0.059* |
| S1 | 0.0271 (3) | 0.0533 (4) | 0.0412 (4) | 0.0032 (3) | −0.0018 (3) | −0.0162 (3) |
| O1 | 0.0387 (11) | 0.0887 (16) | 0.0482 (11) | 0.0263 (10) | −0.0169 (9) | −0.0332 (11) |
| O2 | 0.0344 (9) | 0.0280 (9) | 0.0359 (9) | 0.0044 (8) | −0.0042 (7) | −0.0043 (7) |
| N1 | 0.0248 (9) | 0.0357 (11) | 0.0242 (9) | −0.0003 (8) | −0.0042 (8) | −0.0055 (8) |
| N2 | 0.0269 (10) | 0.0392 (12) | 0.0262 (10) | 0.0057 (9) | −0.0042 (8) | −0.0118 (9) |
| N3 | 0.0280 (9) | 0.0286 (10) | 0.0270 (10) | 0.0032 (9) | −0.0059 (8) | −0.0073 (8) |
| C1 | 0.0390 (15) | 0.0567 (18) | 0.0374 (14) | 0.0123 (13) | −0.0061 (12) | −0.0095 (13) |
| C2 | 0.0505 (17) | 0.0635 (19) | 0.0394 (15) | 0.0131 (15) | 0.0054 (13) | −0.0154 (14) |
| C3 | 0.0531 (17) | 0.0494 (17) | 0.0265 (13) | −0.0062 (14) | −0.0001 (12) | −0.0112 (12) |
| C4 | 0.0389 (14) | 0.067 (2) | 0.0377 (15) | 0.0004 (14) | −0.0096 (12) | −0.0118 (14) |
| C5 | 0.0347 (14) | 0.0535 (17) | 0.0323 (13) | 0.0045 (12) | −0.0021 (11) | −0.0116 (12) |
| C6 | 0.0316 (13) | 0.0303 (13) | 0.0280 (12) | −0.0002 (10) | −0.0017 (10) | −0.0027 (11) |
| C7 | 0.0300 (12) | 0.0332 (14) | 0.0314 (13) | 0.0042 (10) | −0.0046 (10) | −0.0026 (11) |
| C8 | 0.0294 (12) | 0.0253 (12) | 0.0228 (11) | −0.0025 (10) | −0.0034 (10) | 0.0009 (9) |
| C9 | 0.0214 (11) | 0.0280 (13) | 0.0267 (12) | −0.0014 (10) | 0.0019 (9) | −0.0010 (10) |
| C10 | 0.0233 (11) | 0.0289 (13) | 0.0267 (12) | 0.0027 (10) | −0.0056 (9) | −0.0036 (10) |
| C11 | 0.0464 (14) | 0.0374 (15) | 0.0313 (13) | −0.0068 (13) | −0.0024 (11) | 0.0013 (12) |
| C12 | 0.0634 (18) | 0.0546 (18) | 0.0261 (13) | −0.0020 (15) | −0.0060 (12) | −0.0041 (13) |
| C13 | 0.0603 (18) | 0.0505 (18) | 0.0399 (16) | −0.0067 (15) | −0.0182 (13) | −0.0189 (14) |
| C15 | 0.0390 (14) | 0.0368 (15) | 0.0321 (13) | −0.0051 (12) | −0.0082 (11) | 0.0020 (11) |
| F1 | 0.0741 (11) | 0.0980 (14) | 0.0322 (8) | −0.0006 (10) | −0.0036 (8) | −0.0258 (9) |
| F2 | 0.1324 (18) | 0.0781 (14) | 0.0506 (11) | −0.0280 (12) | −0.0284 (11) | −0.0258 (10) |
| C14 | 0.0589 (18) | 0.0370 (16) | 0.0514 (17) | −0.0158 (14) | −0.0154 (14) | −0.0037 (13) |
| S1—C8 | 1.650 (2) | C4—C5 | 1.385 (3) |
| O1—C7 | 1.217 (3) | C4—H4 | 0.9300 |
| O2—C9 | 1.235 (3) | C5—C6 | 1.378 (3) |
| N1—C7 | 1.371 (3) | C5—H5 | 0.9300 |
| N1—C8 | 1.393 (3) | C6—C7 | 1.488 (3) |
| N1—H1A | 0.8600 | C9—C10 | 1.488 (3) |
| N2—C8 | 1.333 (3) | C10—C15 | 1.384 (3) |
| N2—N3 | 1.381 (2) | C10—C11 | 1.387 (3) |
| N2—H2A | 0.8600 | C11—C12 | 1.377 (3) |
| N3—C9 | 1.338 (3) | C11—H11 | 0.9300 |
| N3—H3 | 0.8600 | C12—C13 | 1.362 (4) |
| C1—C2 | 1.382 (3) | C12—H12 | 0.9300 |
| C1—C6 | 1.385 (3) | C13—F2 | 1.363 (3) |
| C1—H1 | 0.9300 | C13—C14 | 1.366 (4) |
| C2—C3 | 1.359 (4) | C15—C14 | 1.381 (3) |
| C2—H2 | 0.9300 | C15—H15 | 0.9300 |
| C3—F1 | 1.357 (3) | C14—H14 | 0.9300 |
| C3—C4 | 1.358 (4) | ||
| C7—N1—C8 | 127.43 (18) | O1—C7—N1 | 121.7 (2) |
| C7—N1—H1A | 116.3 | O1—C7—C6 | 120.2 (2) |
| C8—N1—H1A | 116.3 | N1—C7—C6 | 118.04 (19) |
| C8—N2—N3 | 121.27 (18) | N2—C8—N1 | 114.95 (18) |
| C8—N2—H2A | 119.4 | N2—C8—S1 | 123.80 (16) |
| N3—N2—H2A | 119.4 | N1—C8—S1 | 121.23 (15) |
| C9—N3—N2 | 117.80 (18) | O2—C9—N3 | 122.6 (2) |
| C9—N3—H3 | 121.1 | O2—C9—C10 | 121.8 (2) |
| N2—N3—H3 | 121.1 | N3—C9—C10 | 115.58 (19) |
| C2—C1—C6 | 121.0 (2) | C15—C10—C11 | 119.7 (2) |
| C2—C1—H1 | 119.5 | C15—C10—C9 | 121.3 (2) |
| C6—C1—H1 | 119.5 | C11—C10—C9 | 119.0 (2) |
| C3—C2—C1 | 118.0 (2) | C12—C11—C10 | 120.5 (2) |
| C3—C2—H2 | 121.0 | C12—C11—H11 | 119.7 |
| C1—C2—H2 | 121.0 | C10—C11—H11 | 119.7 |
| F1—C3—C4 | 118.8 (2) | C13—C12—C11 | 118.0 (2) |
| F1—C3—C2 | 118.1 (2) | C13—C12—H12 | 121.0 |
| C4—C3—C2 | 123.0 (2) | C11—C12—H12 | 121.0 |
| C3—C4—C5 | 118.6 (2) | C12—C13—F2 | 117.8 (2) |
| C3—C4—H4 | 120.7 | C12—C13—C14 | 123.5 (2) |
| C5—C4—H4 | 120.7 | F2—C13—C14 | 118.7 (3) |
| C6—C5—C4 | 120.5 (2) | C14—C15—C10 | 120.1 (2) |
| C6—C5—H5 | 119.8 | C14—C15—H15 | 119.9 |
| C4—C5—H5 | 119.8 | C10—C15—H15 | 119.9 |
| C5—C6—C1 | 118.9 (2) | C13—C14—C15 | 118.2 (3) |
| C5—C6—C7 | 124.6 (2) | C13—C14—H14 | 120.9 |
| C1—C6—C7 | 116.4 (2) | C15—C14—H14 | 120.9 |
| C8—N2—N3—C9 | −138.7 (2) | C7—N1—C8—N2 | −0.5 (3) |
| C6—C1—C2—C3 | 0.0 (4) | C7—N1—C8—S1 | −178.67 (18) |
| C1—C2—C3—F1 | −179.2 (3) | N2—N3—C9—O2 | 6.9 (3) |
| C1—C2—C3—C4 | 0.5 (5) | N2—N3—C9—C10 | −171.47 (17) |
| F1—C3—C4—C5 | 179.6 (3) | O2—C9—C10—C15 | −127.2 (2) |
| C2—C3—C4—C5 | −0.1 (4) | N3—C9—C10—C15 | 51.2 (3) |
| C3—C4—C5—C6 | −0.9 (4) | O2—C9—C10—C11 | 49.5 (3) |
| C4—C5—C6—C1 | 1.4 (4) | N3—C9—C10—C11 | −132.0 (2) |
| C4—C5—C6—C7 | −175.0 (2) | C15—C10—C11—C12 | −1.9 (4) |
| C2—C1—C6—C5 | −1.0 (4) | C9—C10—C11—C12 | −178.6 (2) |
| C2—C1—C6—C7 | 175.7 (3) | C10—C11—C12—C13 | 1.1 (4) |
| C8—N1—C7—O1 | −6.0 (4) | C11—C12—C13—F2 | −179.8 (3) |
| C8—N1—C7—C6 | 171.2 (2) | C11—C12—C13—C14 | 0.7 (4) |
| C5—C6—C7—O1 | 172.8 (3) | C11—C10—C15—C14 | 0.9 (4) |
| C1—C6—C7—O1 | −3.6 (4) | C9—C10—C15—C14 | 177.6 (2) |
| C5—C6—C7—N1 | −4.4 (4) | C12—C13—C14—C15 | −1.7 (4) |
| C1—C6—C7—N1 | 179.1 (2) | F2—C13—C14—C15 | 178.8 (3) |
| N3—N2—C8—N1 | −174.21 (18) | C10—C15—C14—C13 | 0.8 (4) |
| N3—N2—C8—S1 | 3.9 (3) |
| H··· | ||||
| N2—H2 | 0.86 | 1.89 | 2.571 (2) | 135 |
| N2—H2 | 0.86 | 2.84 | 3.3875 (18) | 123 |
| N1—H1 | 0.86 | 2.33 | 3.165 (2) | 165 |
| N3—H3···O2iii | 0.86 | 2.10 | 2.942 (2) | 166 |
| C4—H4···F1iv | 0.93 | 2.49 | 3.409 (3) | 169 |
| C5—H5···O2ii | 0.93 | 2.45 | 3.345 (3) | 160 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N2—H2 | 0.86 | 1.89 | 2.571 (2) | 135 |
| N2—H2 | 0.86 | 2.84 | 3.3875 (18) | 123 |
| N1—H1 | 0.86 | 2.33 | 3.165 (2) | 165 |
| N3—H3⋯O2iii | 0.86 | 2.10 | 2.942 (2) | 166 |
| C4—H4⋯F1iv | 0.93 | 2.49 | 3.409 (3) | 169 |
| C5—H5⋯O2ii | 0.93 | 2.45 | 3.345 (3) | 160 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .