Literature DB >> 25309250

Crystal structure of 4-fluoro-N-[2-(4-fluoro-benzo-yl)hydra-zine-1-carbono-thio-yl]benzamide.

Syadza Firdausiah1, Ameera Aqeela Salleh Huddin1, Siti Aishah Hasbullah1, Bohari M Yamin1, Siti Fairus M Yusoff1.   

Abstract

In the title compound, C15H11F2N3O2S, the dihedral angle between the fluoro-benzene rings is 88.43 (10)° and that between the central semithiocarbazide grouping is 47.00 (11)°. The dihedral angle between the amide group and attached fluoro-benzene ring is 50.52 (11)°; the equivalent angle between the carbonyl-thio-amide group and its attached ring is 12.98 (10)°. The major twists in the mol-ecule occur about the C-N-N-C bonds [torsion angle = -138.7 (2)°] and the Car-Car-C-N (ar = aromatic) bonds [-132.0 (2)°]. An intra-molecular N-H⋯O hydrogen bond occurs, which generates an S(6) ring. In the crystal, the mol-ecules are linked by N-H⋯O and N-H⋯S hydrogen bonds, generating (001) sheets. Weak C-H⋯O and C-H⋯F inter-actions are also observed.

Entities:  

Keywords:  crystal structure; hydrogen bonds; semithiocarbazide

Year:  2014        PMID: 25309250      PMCID: PMC4186173          DOI: 10.1107/S1600536814015761

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For further synthetic details and the crystal structures of related thio­urea derivatives, see: Yamin & Yusof (2003a ▶,b ▶); Yusof et al. (2003 ▶); For a metal complex with a similar ligand, see: Ke et al. (2007 ▶).

Experimental

Crystal data

C15H11F2N3O2S M = 335.33 Orthorhombic, a = 11.6172 (6) Å b = 8.4086 (5) Å c = 30.0002 (16) Å V = 2930.6 (3) Å3 Z = 8 Mo Kα radiation μ = 0.26 mm−1 T = 296 K 0.50 × 0.12 × 0.08 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.883, T max = 0.980 76830 measured reflections 2886 independent reflections 2024 reflections with I > 2σ(I) R int = 0.137

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.099 S = 1.04 2886 reflections 208 parameters H-atom parameters constrained Δρmax = 0.27 e Å−3 Δρmin = −0.21 e Å−3

Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814015761/hb7245sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814015761/hb7245Isup2.hkl Click here for additional data file. . DOI: 10.1107/S1600536814015761/hb7245fig1.tif Mol­ecular structure of (I) with 50% probability displacement ellipsoids. The dashes line indicates the intra­molecular hydrogen bond. Click here for additional data file. . DOI: 10.1107/S1600536814015761/hb7245fig2.tif Unit-cell packing for (I) in the unit cell viewed down a axis. The dashes lines indicate hydrogen bonds. CCDC reference: 1012471 Additional supporting information: crystallographic information; 3D view; checkCIF report
C15H11F2N3O2SZ = 8
Mr = 335.33F(000) = 1376
Orthorhombic, PbcaDx = 1.520 Mg m3
Hall symbol: -P 2ac 2abMo Kα radiation, λ = 0.71073 Å
a = 11.6172 (6) ŵ = 0.26 mm1
b = 8.4086 (5) ÅT = 296 K
c = 30.0002 (16) ÅBlock, colorless
V = 2930.6 (3) Å30.50 × 0.12 × 0.08 mm
Bruker SMART APEX CCD diffractometer2886 independent reflections
Radiation source: fine-focus sealed tube2024 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.137
ω scansθmax = 26.0°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −14→14
Tmin = 0.883, Tmax = 0.980k = −10→10
76830 measured reflectionsl = −37→37
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.099H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0354P)2 + 2.0394P] where P = (Fo2 + 2Fc2)/3
2886 reflections(Δ/σ)max = 0.001
208 parametersΔρmax = 0.27 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.98887 (5)0.15863 (8)0.73680 (2)0.04054 (19)
O10.69608 (15)0.4074 (2)0.80598 (6)0.0585 (6)
O20.64343 (13)0.34844 (18)0.67414 (5)0.0328 (4)
N10.88035 (15)0.3239 (2)0.79937 (6)0.0283 (4)
H1A0.94720.32900.81160.034*
N20.76928 (15)0.2357 (2)0.74100 (6)0.0308 (5)
H2A0.71370.28710.75330.037*
N30.74823 (15)0.1473 (2)0.70307 (5)0.0278 (4)
H30.77840.05480.69950.033*
C10.7245 (2)0.5302 (3)0.88928 (8)0.0444 (7)
H10.65580.54690.87410.053*
C20.7347 (2)0.5802 (3)0.93299 (8)0.0511 (7)
H20.67380.63030.94740.061*
C30.8362 (2)0.5540 (3)0.95425 (8)0.0430 (7)
C40.9276 (2)0.4826 (3)0.93441 (8)0.0479 (7)
H40.99590.46670.95000.057*
C50.9171 (2)0.4339 (3)0.89050 (8)0.0402 (6)
H50.97920.38610.87620.048*
C60.81520 (19)0.4557 (3)0.86779 (7)0.0300 (5)
C70.79209 (19)0.3964 (3)0.82191 (7)0.0315 (5)
C80.87407 (18)0.2428 (3)0.75895 (7)0.0258 (5)
C90.67935 (17)0.2104 (3)0.67201 (7)0.0254 (5)
C100.64585 (18)0.1018 (3)0.63505 (7)0.0263 (5)
C110.6553 (2)0.1549 (3)0.59144 (7)0.0383 (6)
H110.68380.25630.58580.046*
C120.6228 (2)0.0589 (3)0.55647 (8)0.0481 (7)
H120.63000.09310.52710.058*
C130.5797 (2)−0.0878 (3)0.56616 (9)0.0503 (7)
C150.6004 (2)−0.0473 (3)0.64350 (8)0.0360 (6)
H150.5929−0.08280.67270.043*
F10.84583 (15)0.6012 (2)0.99733 (5)0.0681 (5)
F20.54797 (19)−0.1828 (2)0.53146 (6)0.0870 (7)
C140.5660 (2)−0.1434 (3)0.60860 (9)0.0491 (7)
H140.5344−0.24330.61390.059*
U11U22U33U12U13U23
S10.0271 (3)0.0533 (4)0.0412 (4)0.0032 (3)−0.0018 (3)−0.0162 (3)
O10.0387 (11)0.0887 (16)0.0482 (11)0.0263 (10)−0.0169 (9)−0.0332 (11)
O20.0344 (9)0.0280 (9)0.0359 (9)0.0044 (8)−0.0042 (7)−0.0043 (7)
N10.0248 (9)0.0357 (11)0.0242 (9)−0.0003 (8)−0.0042 (8)−0.0055 (8)
N20.0269 (10)0.0392 (12)0.0262 (10)0.0057 (9)−0.0042 (8)−0.0118 (9)
N30.0280 (9)0.0286 (10)0.0270 (10)0.0032 (9)−0.0059 (8)−0.0073 (8)
C10.0390 (15)0.0567 (18)0.0374 (14)0.0123 (13)−0.0061 (12)−0.0095 (13)
C20.0505 (17)0.0635 (19)0.0394 (15)0.0131 (15)0.0054 (13)−0.0154 (14)
C30.0531 (17)0.0494 (17)0.0265 (13)−0.0062 (14)−0.0001 (12)−0.0112 (12)
C40.0389 (14)0.067 (2)0.0377 (15)0.0004 (14)−0.0096 (12)−0.0118 (14)
C50.0347 (14)0.0535 (17)0.0323 (13)0.0045 (12)−0.0021 (11)−0.0116 (12)
C60.0316 (13)0.0303 (13)0.0280 (12)−0.0002 (10)−0.0017 (10)−0.0027 (11)
C70.0300 (12)0.0332 (14)0.0314 (13)0.0042 (10)−0.0046 (10)−0.0026 (11)
C80.0294 (12)0.0253 (12)0.0228 (11)−0.0025 (10)−0.0034 (10)0.0009 (9)
C90.0214 (11)0.0280 (13)0.0267 (12)−0.0014 (10)0.0019 (9)−0.0010 (10)
C100.0233 (11)0.0289 (13)0.0267 (12)0.0027 (10)−0.0056 (9)−0.0036 (10)
C110.0464 (14)0.0374 (15)0.0313 (13)−0.0068 (13)−0.0024 (11)0.0013 (12)
C120.0634 (18)0.0546 (18)0.0261 (13)−0.0020 (15)−0.0060 (12)−0.0041 (13)
C130.0603 (18)0.0505 (18)0.0399 (16)−0.0067 (15)−0.0182 (13)−0.0189 (14)
C150.0390 (14)0.0368 (15)0.0321 (13)−0.0051 (12)−0.0082 (11)0.0020 (11)
F10.0741 (11)0.0980 (14)0.0322 (8)−0.0006 (10)−0.0036 (8)−0.0258 (9)
F20.1324 (18)0.0781 (14)0.0506 (11)−0.0280 (12)−0.0284 (11)−0.0258 (10)
C140.0589 (18)0.0370 (16)0.0514 (17)−0.0158 (14)−0.0154 (14)−0.0037 (13)
S1—C81.650 (2)C4—C51.385 (3)
O1—C71.217 (3)C4—H40.9300
O2—C91.235 (3)C5—C61.378 (3)
N1—C71.371 (3)C5—H50.9300
N1—C81.393 (3)C6—C71.488 (3)
N1—H1A0.8600C9—C101.488 (3)
N2—C81.333 (3)C10—C151.384 (3)
N2—N31.381 (2)C10—C111.387 (3)
N2—H2A0.8600C11—C121.377 (3)
N3—C91.338 (3)C11—H110.9300
N3—H30.8600C12—C131.362 (4)
C1—C21.382 (3)C12—H120.9300
C1—C61.385 (3)C13—F21.363 (3)
C1—H10.9300C13—C141.366 (4)
C2—C31.359 (4)C15—C141.381 (3)
C2—H20.9300C15—H150.9300
C3—F11.357 (3)C14—H140.9300
C3—C41.358 (4)
C7—N1—C8127.43 (18)O1—C7—N1121.7 (2)
C7—N1—H1A116.3O1—C7—C6120.2 (2)
C8—N1—H1A116.3N1—C7—C6118.04 (19)
C8—N2—N3121.27 (18)N2—C8—N1114.95 (18)
C8—N2—H2A119.4N2—C8—S1123.80 (16)
N3—N2—H2A119.4N1—C8—S1121.23 (15)
C9—N3—N2117.80 (18)O2—C9—N3122.6 (2)
C9—N3—H3121.1O2—C9—C10121.8 (2)
N2—N3—H3121.1N3—C9—C10115.58 (19)
C2—C1—C6121.0 (2)C15—C10—C11119.7 (2)
C2—C1—H1119.5C15—C10—C9121.3 (2)
C6—C1—H1119.5C11—C10—C9119.0 (2)
C3—C2—C1118.0 (2)C12—C11—C10120.5 (2)
C3—C2—H2121.0C12—C11—H11119.7
C1—C2—H2121.0C10—C11—H11119.7
F1—C3—C4118.8 (2)C13—C12—C11118.0 (2)
F1—C3—C2118.1 (2)C13—C12—H12121.0
C4—C3—C2123.0 (2)C11—C12—H12121.0
C3—C4—C5118.6 (2)C12—C13—F2117.8 (2)
C3—C4—H4120.7C12—C13—C14123.5 (2)
C5—C4—H4120.7F2—C13—C14118.7 (3)
C6—C5—C4120.5 (2)C14—C15—C10120.1 (2)
C6—C5—H5119.8C14—C15—H15119.9
C4—C5—H5119.8C10—C15—H15119.9
C5—C6—C1118.9 (2)C13—C14—C15118.2 (3)
C5—C6—C7124.6 (2)C13—C14—H14120.9
C1—C6—C7116.4 (2)C15—C14—H14120.9
C8—N2—N3—C9−138.7 (2)C7—N1—C8—N2−0.5 (3)
C6—C1—C2—C30.0 (4)C7—N1—C8—S1−178.67 (18)
C1—C2—C3—F1−179.2 (3)N2—N3—C9—O26.9 (3)
C1—C2—C3—C40.5 (5)N2—N3—C9—C10−171.47 (17)
F1—C3—C4—C5179.6 (3)O2—C9—C10—C15−127.2 (2)
C2—C3—C4—C5−0.1 (4)N3—C9—C10—C1551.2 (3)
C3—C4—C5—C6−0.9 (4)O2—C9—C10—C1149.5 (3)
C4—C5—C6—C11.4 (4)N3—C9—C10—C11−132.0 (2)
C4—C5—C6—C7−175.0 (2)C15—C10—C11—C12−1.9 (4)
C2—C1—C6—C5−1.0 (4)C9—C10—C11—C12−178.6 (2)
C2—C1—C6—C7175.7 (3)C10—C11—C12—C131.1 (4)
C8—N1—C7—O1−6.0 (4)C11—C12—C13—F2−179.8 (3)
C8—N1—C7—C6171.2 (2)C11—C12—C13—C140.7 (4)
C5—C6—C7—O1172.8 (3)C11—C10—C15—C140.9 (4)
C1—C6—C7—O1−3.6 (4)C9—C10—C15—C14177.6 (2)
C5—C6—C7—N1−4.4 (4)C12—C13—C14—C15−1.7 (4)
C1—C6—C7—N1179.1 (2)F2—C13—C14—C15178.8 (3)
N3—N2—C8—N1−174.21 (18)C10—C15—C14—C130.8 (4)
N3—N2—C8—S13.9 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O10.861.892.571 (2)135
N2—H2A···S1i0.862.843.3875 (18)123
N1—H1A···O2ii0.862.333.165 (2)165
N3—H3···O2iii0.862.102.942 (2)166
C4—H4···F1iv0.932.493.409 (3)169
C5—H5···O2ii0.932.453.345 (3)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯O10.861.892.571 (2)135
N2—H2A⋯S1i 0.862.843.3875 (18)123
N1—H1A⋯O2ii 0.862.333.165 (2)165
N3—H3⋯O2iii 0.862.102.942 (2)166
C4—H4⋯F1iv 0.932.493.409 (3)169
C5—H5⋯O2ii 0.932.453.345 (3)160

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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