Literature DB >> 25309248

Crystal structure of N (1)-benzyl-N (1),N (2),N (2)-tri-methyl-ethane-1,2-diaminium dichloride.

Pushpendra Singh1, Harkesh B Singh1, Ray J Butcher2.   

Abstract

In the title mol-ecular n class="Chemical">salt, C12H22N2 (2+)·2Cl(-), which was obtained as a by-product in the attempted synthesis of a mercury derivative, the conformation of the N-C-C-N bond in the cation is anti [torsion angle = 175.1 (10)°]. In the crystal, the cations are linked to the anions by N-H⋯Cl hydrogen bonds, generating ion-triplets. These are linked by numerous weak C-H⋯Cl inter-actions, generating a three-dimensional network. The structure was refined as an inversion twin.

Entities:  

Keywords:  C—H⋯Cl inter­actions; crystal structure; hydrogen bonds; inversion twin; ion-triplets

Year:  2014        PMID: 25309248      PMCID: PMC4186135          DOI: 10.1107/S1600536814015797

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For further synthetic details, see: Rietveld et al. (1994 ▶). For the application of the parent di­amine as a precursor of anti-histamine derivatives for therapeutic use, see: Gardner & Stevens (1949 ▶); Fox & Wenner (1951 ▶); For a related structure, see: Manjare et al. (2014 ▶).

Experimental

Crystal data

C12H22N2 2+·2Cl− M = 265.21 Monoclinic, a = 5.6744 (7) Å b = 22.384 (3) Å c = 5.9991 (7) Å β = 105.372 (12)° V = 734.72 (16) Å3 Z = 2 Cu Kα radiation μ = 3.79 mm−1 T = 123 K 0.49 × 0.16 × 0.13 mm

Data collection

Agilent Xcalibur, Ruby, Gemini diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012 ▶) T min = 0.273, T max = 1.000 2002 measured reflections 1986 independent reflections 1961 reflections with I > 2σ(I) R int = 0.000

Refinement

R[F 2 > 2σ(F 2)] = 0.082 wR(F 2) = 0.229 S = 1.13 1986 reflections 149 parameters 7 restraints H-atom parameters constrained Δρmax = 1.15 e Å−3 Δρmin = −0.62 e Å−3 Refined as an inversion twin Absolute structure parameter: 0.25 (7)

Data collection: CrysAlis PRO (Agilent, 2012 ▶); cell refinement: CrysAlis PRO (Agilent, 2012 ▶); data reduction: CrysAlis PRO (Agilent, 2012 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814015797/hb7244sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814015797/hb7244Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814015797/hb7244Isup3.cml Click here for additional data file. 12 22 2 . DOI: 10.1107/S1600536814015797/hb7244fig1.tif The mol­ecular structure of C12H22N2·2Cl showing 30% probability displacement ellipsoids and the n class="Chemical">N—H⋯Cl hydrogen bonds (shown as dashed lines). Click here for additional data file. 12 22 2 b . DOI: 10.1107/S1600536814015797/hb7244fig2.tif The packing for C12H22N2·2Cl viewed along the b axis showing the linking of the cations and anions into a three-dimensional array by an extensive network of C—H⋯Cl inter­actions (shown as dashed bonds). CCDC reference: 1012363 Additional supporting information: crystallographic information; 3D view; checkCIF report
C12H22N22+·2ClF(000) = 284
Mr = 265.21Dx = 1.199 Mg m3
Monoclinic, P21Cu Kα radiation, λ = 1.54178 Å
a = 5.6744 (7) ÅCell parameters from 1555 reflections
b = 22.384 (3) Åθ = 4.0–76.4°
c = 5.9991 (7) ŵ = 3.79 mm1
β = 105.372 (12)°T = 123 K
V = 734.72 (16) Å3Needle, colorless
Z = 20.49 × 0.16 × 0.13 mm
Agilent Xcalibur, Ruby, Gemini diffractometer1961 reflections with I > 2σ(I)
Detector resolution: 10.5081 pixels mm-1Rint = 0.000
ω scansθmax = 76.6°, θmin = 4.0°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2012)h = −7→6
Tmin = 0.273, Tmax = 1.000k = −27→21
2002 measured reflectionsl = 0→7
1986 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.082H-atom parameters constrained
wR(F2) = 0.229w = 1/[σ2(Fo2) + (0.1591P)2 + 1.0863P] where P = (Fo2 + 2Fc2)/3
S = 1.13(Δ/σ)max < 0.001
1986 reflectionsΔρmax = 1.15 e Å3
149 parametersΔρmin = −0.62 e Å3
7 restraintsAbsolute structure: Refined as an inversion twin.
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.25 (7)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refined as a 2-component inversion twin.
xyzUiso*/Ueq
Cl10.5443 (3)0.30227 (7)1.3350 (2)0.0313 (4)
Cl2−0.5635 (2)0.48206 (5)0.67629 (19)0.0219 (3)
N10.0818 (16)0.3087 (4)0.9195 (14)0.052 (2)
H1A0.22960.30601.05400.063*
N2−0.0884 (18)0.4633 (5)1.083 (2)0.061 (2)
H2B−0.22250.46400.93630.074*
C10.092 (2)0.1998 (6)0.814 (2)0.065 (3)
C2−0.012 (3)0.1787 (6)0.583 (2)0.078 (4)
H2A−0.16560.19190.49030.094*
C30.141 (3)0.1344 (6)0.500 (2)0.075 (3)
H3A0.08180.11800.34930.090*
C40.359 (3)0.1172 (6)0.629 (3)0.092 (4)
H4A0.45630.09070.56700.110*
C50.446 (3)0.1374 (7)0.855 (3)0.094 (5)
H5A0.60030.12390.94580.113*
C60.310 (2)0.1772 (6)0.950 (2)0.074 (3)
H6A0.36620.18871.10750.088*
C7−0.044 (3)0.2487 (6)0.896 (2)0.067 (3)
H7A−0.06770.23721.04790.080*
H7B−0.20770.25250.78610.080*
C80.171 (2)0.3228 (4)0.7060 (17)0.050 (2)
H8A0.24880.36220.72390.074*
H8B0.03180.32270.56830.074*
H8C0.28960.29250.68900.074*
C9−0.065 (2)0.3554 (5)0.967 (2)0.057 (3)
H9A−0.14540.34161.08620.069*
H9B−0.19550.36460.82530.069*
C100.079 (2)0.4127 (6)1.0534 (19)0.058 (3)
H10A0.19970.40471.20310.069*
H10B0.17060.42490.94110.069*
C11−0.205 (3)0.4576 (7)1.257 (3)0.075 (4)
H11A−0.08330.45791.40770.113*
H11B−0.29580.41981.23830.113*
H11C−0.31860.49101.24940.113*
C120.045 (3)0.5223 (6)1.088 (2)0.066 (3)
H12A−0.07410.55461.03810.099*
H12B0.15170.52020.98380.099*
H12C0.14410.53041.24590.099*
U11U22U33U12U13U23
Cl10.0262 (7)0.0399 (11)0.0259 (7)−0.0014 (7)0.0034 (6)0.0010 (6)
Cl20.0176 (6)0.0285 (7)0.0176 (6)−0.0026 (6)0.0012 (4)0.0048 (5)
N10.049 (4)0.063 (5)0.038 (4)−0.010 (4)−0.001 (3)0.007 (4)
N20.044 (4)0.060 (6)0.084 (6)0.002 (4)0.024 (4)0.005 (4)
C10.065 (6)0.067 (7)0.067 (6)0.001 (5)0.026 (5)−0.006 (5)
C20.082 (9)0.080 (8)0.065 (7)−0.004 (7)0.007 (6)−0.004 (6)
C30.091 (8)0.053 (6)0.081 (7)−0.008 (7)0.023 (6)−0.012 (6)
C40.107 (10)0.045 (6)0.143 (13)0.000 (7)0.067 (9)−0.017 (7)
C50.084 (9)0.055 (6)0.130 (12)0.005 (8)0.006 (8)−0.012 (9)
C60.067 (7)0.083 (9)0.071 (7)−0.003 (6)0.019 (6)0.002 (6)
C70.076 (7)0.070 (7)0.060 (6)−0.003 (6)0.025 (5)−0.002 (5)
C80.060 (6)0.049 (6)0.034 (4)−0.005 (4)0.002 (4)0.002 (3)
C90.050 (5)0.063 (6)0.060 (6)0.006 (5)0.016 (5)0.003 (5)
C100.050 (5)0.065 (6)0.049 (5)0.007 (5)−0.004 (4)0.009 (4)
C110.056 (6)0.086 (8)0.078 (7)−0.009 (6)0.007 (6)−0.018 (6)
C120.061 (6)0.068 (7)0.063 (7)0.011 (6)0.006 (5)0.006 (5)
N1—C91.413 (15)C5—H5A0.9500
N1—C71.511 (17)C6—H6A0.9500
N1—C81.530 (14)C7—H7A0.9900
N1—H1A1.0000C7—H7B0.9900
N2—C111.38 (2)C8—H8A0.9800
N2—C101.520 (16)C8—H8B0.9800
N2—C121.521 (17)C8—H8C0.9800
N2—H2B1.0000C9—C101.538 (16)
C1—C61.382 (18)C9—H9A0.9900
C1—C21.435 (18)C9—H9B0.9900
C1—C71.497 (18)C10—H10A0.9900
C2—C31.49 (2)C10—H10B0.9900
C2—H2A0.9500C11—H11A0.9800
C3—C41.33 (2)C11—H11B0.9800
C3—H3A0.9500C11—H11C0.9800
C4—C51.39 (2)C12—H12A0.9800
C4—H4A0.9500C12—H12B0.9800
C5—C61.40 (2)C12—H12C0.9800
C9—N1—C7112.7 (9)C1—C7—H7B108.7
C9—N1—C8111.3 (9)N1—C7—H7B108.7
C7—N1—C8111.0 (8)H7A—C7—H7B107.6
C9—N1—H1A107.2N1—C8—H8A109.5
C7—N1—H1A107.2N1—C8—H8B109.5
C8—N1—H1A107.2H8A—C8—H8B109.5
C11—N2—C10117.4 (11)N1—C8—H8C109.5
C11—N2—C12113.6 (11)H8A—C8—H8C109.5
C10—N2—C12109.0 (9)H8B—C8—H8C109.5
C11—N2—H2B105.2N1—C9—C10113.1 (9)
C10—N2—H2B105.2N1—C9—H9A109.0
C12—N2—H2B105.2C10—C9—H9A109.0
C6—C1—C2121.6 (13)N1—C9—H9B109.0
C6—C1—C7122.1 (12)C10—C9—H9B109.0
C2—C1—C7116.3 (12)H9A—C9—H9B107.8
C1—C2—C3114.6 (13)N2—C10—C9111.4 (9)
C1—C2—H2A122.7N2—C10—H10A109.3
C3—C2—H2A122.7C9—C10—H10A109.3
C4—C3—C2122.1 (13)N2—C10—H10B109.3
C4—C3—H3A118.9C9—C10—H10B109.3
C2—C3—H3A118.9H10A—C10—H10B108.0
C3—C4—C5120.6 (15)N2—C11—H11A109.5
C3—C4—H4A119.7N2—C11—H11B109.5
C5—C4—H4A119.7H11A—C11—H11B109.5
C4—C5—C6121.0 (14)N2—C11—H11C109.5
C4—C5—H5A119.5H11A—C11—H11C109.5
C6—C5—H5A119.5H11B—C11—H11C109.5
C1—C6—C5119.7 (13)N2—C12—H12A109.5
C1—C6—H6A120.1N2—C12—H12B109.5
C5—C6—H6A120.1H12A—C12—H12B109.5
C1—C7—N1114.2 (11)N2—C12—H12C109.5
C1—C7—H7A108.7H12A—C12—H12C109.5
N1—C7—H7A108.7H12B—C12—H12C109.5
C6—C1—C2—C3−4 (2)C2—C1—C7—N1−108.9 (14)
C7—C1—C2—C3174.3 (12)C9—N1—C7—C1172.2 (10)
C1—C2—C3—C4−1 (2)C8—N1—C7—C146.6 (13)
C2—C3—C4—C54 (2)C7—N1—C9—C10165.1 (9)
C3—C4—C5—C6−1 (3)C8—N1—C9—C10−69.5 (11)
C2—C1—C6—C57 (2)C11—N2—C10—C967.8 (13)
C7—C1—C6—C5−171.5 (14)C12—N2—C10—C9−161.2 (10)
C4—C5—C6—C1−4 (2)N1—C9—C10—N2175.1 (10)
C6—C1—C7—N169.3 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cl11.002.113.107 (8)179
N2—H2B···Cl21.002.183.148 (11)163
C7—H7B···Cl1i0.992.923.749 (13)142
C8—H8A···Cl2ii0.982.933.893 (10)168
C8—H8B···Cl1i0.982.793.690 (11)154
C8—H8C···Cl1iii0.982.883.486 (12)121
C9—H9A···Cl1iv0.992.743.711 (12)168
C10—H10A···Cl10.992.983.682 (11)129
C10—H10B···Cl2ii0.992.783.750 (13)168
C11—H11B···Cl1iv0.982.893.831 (17)161
C12—H12B···Cl2ii0.982.893.842 (15)166
C12—H12C···Cl2v0.982.883.747 (13)147
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1A⋯Cl11.002.113.107 (8)179
N2—H2B⋯Cl21.002.183.148 (11)163
C7—H7B⋯Cl1i 0.992.923.749 (13)142
C8—H8A⋯Cl2ii 0.982.933.893 (10)168
C8—H8B⋯Cl1i 0.982.793.690 (11)154
C8—H8C⋯Cl1iii 0.982.883.486 (12)121
C9—H9A⋯Cl1iv 0.992.743.711 (12)168
C10—H10A⋯Cl10.992.983.682 (11)129
C10—H10B⋯Cl2ii 0.992.783.750 (13)168
C11—H11B⋯Cl1iv 0.982.893.831 (17)161
C12—H12B⋯Cl2ii 0.982.893.842 (15)166
C12—H12C⋯Cl2v 0.982.883.747 (13)147

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Crystal structure of (N (1)-benzyl-N (1),N (2),N (2)-tri-methyl-ethane-1,2-di-amine-κ(2) N,N')di-chloridomercury(II).

Authors:  Sudesh T Manjare; Harkesh B Singh; Ray J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-06
  2 in total

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