Literature DB >> 25309242

Crystal structure of (E)-1-(4-chloro-phen-yl)ethanone O-de-hydro-abietyloxime.

Jian-Qiang Zheng1, Yan-Jie Cui1, Xiao-Ping Rao1.   

Abstract

The title compound, C28H34ClNO2 {systematic name: (E)-1-(4-chloro-phen-yl)ethanone O-[(1R,4aS,10aR)-7-isopropyl-1,4a-di-methyl-1,2,3,4,4a,9,10,10a-octa-hydro-phenanthrene-1-carbonyl]oxime}, was synthesized from de-hydro-abietic acid. In the de-hydro-abietyl moiety, the central and terminal cyclo-hexane rings display chair and half-chair conformations, respectively, and a trans-ring junction. The C=N bond is in an E conformation and the C-O-N=C torsion angle is 148.1 (5)°. No directional inter-actions except van der Waals contacts occur in the crystal structure.

Entities:  

Keywords:  crystal structure; dehydroabietic acid derivative; oxime

Year:  2014        PMID: 25309242      PMCID: PMC4186074          DOI: 10.1107/S1600536814015888

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of de­hydro­abietic acid derivatives, see: Cui et al. (2013 ▶); Rao et al. (2008 ▶); Sepulveda et al. (2005 ▶). For the crystal structures of de­hydro­abietic acid derivatives, see: Rao et al. (2006 ▶, 2009 ▶).

Experimental

Crystal data

C28H34ClNO2 M = 452.01 Orthorhombic, a = 28.804 (6) Å b = 6.1760 (12) Å c = 13.922 (3) Å V = 2476.6 (9) Å3 Z = 4 Mo Kα radiation μ = 0.18 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.948, T max = 0.982 5186 measured reflections 4554 independent reflections 2566 reflections with I > 2σ(I) R int = 0.099 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.205 S = 1.00 4554 reflections 289 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.23 e Å−3 Absolute structure: Flack (1983 ▶), 1911 Friedel pairs Absolute structure parameter: 0.05 (16)

Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814015888/hb7249sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814015888/hb7249Isup2.hkl Click here for additional data file. . DOI: 10.1107/S1600536814015888/hb7249fig1.tif Mol­ecular structure of the title compound, with displacement ellipsoids drawn at the 30% probability level. CCDC reference: 1012686 Additional supporting information: crystallographic information; 3D view; checkCIF report
C28H34ClNO2F(000) = 968
Mr = 452.01Dx = 1.212 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 25 reflections
a = 28.804 (6) Åθ = 9–13°
b = 6.1760 (12) ŵ = 0.18 mm1
c = 13.922 (3) ÅT = 293 K
V = 2476.6 (9) Å3Block, colourless
Z = 40.30 × 0.20 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer2566 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.099
Graphite monochromatorθmax = 25.4°, θmin = 1.4°
ω/2θ scansh = −34→34
Absorption correction: ψ scan (North et al., 1968)k = 0→7
Tmin = 0.948, Tmax = 0.982l = 0→16
5186 measured reflections3 standard reflections every 200 reflections
4554 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.069H-atom parameters constrained
wR(F2) = 0.205w = 1/[σ2(Fo2) + (0.1P)2 + 0.3P] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
4554 reflectionsΔρmax = 0.18 e Å3
289 parametersΔρmin = −0.23 e Å3
0 restraintsAbsolute structure: Flack (1983), 1911 Friedel pairs
Primary atom site location: structure-invariant direct methodsAbsolute structure parameter: 0.05 (16)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl0.59358 (6)0.1759 (3)0.58245 (11)0.0903 (6)
N0.41858 (16)0.1075 (8)0.2777 (4)0.0786 (15)
O10.34454 (14)0.3392 (7)0.2493 (3)0.0917 (14)
C10.0874 (3)0.9817 (14)0.1786 (7)0.143 (4)
H1A0.05981.06540.18900.214*
H1B0.10881.06370.14030.214*
H1C0.10140.94790.23930.214*
O20.38242 (13)0.0305 (7)0.2150 (3)0.0774 (12)
C20.0380 (2)0.6446 (14)0.1772 (5)0.106 (2)
H2A0.03030.51750.14090.159*
H2B0.01090.73340.18440.159*
H2C0.04920.60280.23940.159*
C30.07480 (18)0.7692 (9)0.1256 (4)0.0707 (16)
H3A0.06170.81100.06340.085*
C40.11734 (16)0.6380 (9)0.1050 (4)0.0564 (13)
C50.13208 (17)0.5982 (9)0.0124 (4)0.0574 (13)
H5A0.11540.6568−0.03860.069*
C60.17069 (17)0.4744 (8)−0.0067 (3)0.0527 (12)
H6A0.17990.4552−0.07010.063*
C70.19647 (15)0.3765 (8)0.0666 (3)0.0463 (11)
C80.18179 (17)0.4124 (8)0.1606 (3)0.0525 (13)
C90.14295 (17)0.5418 (9)0.1772 (4)0.0574 (13)
H9A0.13380.56450.24040.069*
C100.23686 (16)0.2213 (8)0.0425 (3)0.0480 (11)
C110.26936 (15)0.2185 (8)0.1322 (3)0.0492 (11)
H11A0.27720.37070.14400.059*
C120.24209 (17)0.1469 (9)0.2209 (3)0.0560 (13)
H12A0.22650.01080.20790.067*
H12B0.26320.12520.27440.067*
C130.20670 (18)0.3184 (11)0.2463 (3)0.0711 (16)
H13A0.18390.25580.28950.085*
H13B0.22220.43460.28050.085*
C140.26495 (17)0.3094 (9)−0.0430 (3)0.0589 (13)
H14A0.24620.3009−0.10070.071*
H14B0.27220.4606−0.03170.071*
C150.30964 (17)0.1850 (10)−0.0586 (3)0.0646 (14)
H15A0.30240.0354−0.07370.077*
H15B0.32620.2463−0.11290.077*
C160.34032 (18)0.1924 (10)0.0290 (3)0.0631 (14)
H16A0.34960.34120.04060.076*
H16B0.36820.10910.01650.076*
C170.31646 (17)0.1025 (7)0.1202 (3)0.0487 (11)
C180.21533 (19)0.0064 (8)0.0147 (4)0.0611 (14)
H18A0.1982−0.05050.06820.092*
H18B0.2394−0.0936−0.00290.092*
H18C0.19480.0272−0.03880.092*
C190.3132 (2)−0.1455 (8)0.1193 (4)0.0704 (15)
H19A0.3437−0.20600.11180.106*
H19B0.2939−0.19090.06680.106*
H19C0.2999−0.19480.17870.106*
C200.34771 (18)0.1739 (10)0.2020 (4)0.0627 (14)
C210.43576 (18)−0.0547 (9)0.3230 (4)0.0562 (13)
C220.4184 (2)−0.2817 (10)0.3171 (5)0.0831 (19)
H22A0.3926−0.28810.27340.125*
H22B0.4085−0.32870.37960.125*
H22C0.4428−0.37450.29450.125*
C230.47602 (16)−0.0019 (9)0.3849 (3)0.0551 (12)
C240.4921 (2)−0.1439 (10)0.4542 (4)0.0766 (17)
H24A0.4777−0.27800.46050.092*
C250.5287 (2)−0.0937 (11)0.5145 (4)0.0809 (19)
H25A0.5389−0.19220.56040.097*
C260.54968 (19)0.1069 (11)0.5048 (4)0.0647 (15)
C270.53477 (18)0.2524 (11)0.4368 (4)0.0698 (16)
H27A0.54910.38680.43140.084*
C280.49870 (18)0.1988 (9)0.3768 (4)0.0653 (14)
H28A0.48910.29680.33010.078*
U11U22U33U12U13U23
Cl0.0746 (9)0.1184 (14)0.0778 (10)−0.0015 (10)−0.0227 (8)0.0008 (10)
N0.069 (3)0.072 (3)0.095 (4)−0.004 (3)−0.039 (3)−0.005 (3)
O10.080 (3)0.081 (3)0.113 (3)0.019 (2)−0.041 (3)−0.049 (3)
C10.094 (5)0.082 (5)0.253 (11)0.014 (5)0.004 (6)−0.073 (7)
O20.070 (2)0.062 (2)0.099 (3)0.011 (2)−0.036 (2)−0.017 (2)
C20.069 (4)0.109 (6)0.139 (6)0.014 (4)0.026 (4)0.023 (5)
C30.064 (3)0.067 (4)0.080 (4)0.011 (3)0.000 (3)0.003 (3)
C40.050 (3)0.062 (3)0.057 (3)−0.001 (3)−0.004 (2)−0.004 (3)
C50.054 (3)0.064 (3)0.054 (3)0.001 (3)−0.014 (2)0.000 (3)
C60.060 (3)0.059 (3)0.039 (3)0.003 (3)−0.006 (2)−0.005 (2)
C70.045 (2)0.054 (3)0.040 (3)−0.001 (2)−0.0046 (19)−0.003 (2)
C80.052 (3)0.066 (3)0.040 (3)0.011 (3)−0.003 (2)0.003 (2)
C90.056 (3)0.073 (3)0.044 (3)0.001 (3)0.001 (2)−0.004 (3)
C100.055 (3)0.052 (3)0.038 (2)−0.007 (2)0.000 (2)−0.002 (2)
C110.047 (2)0.055 (3)0.046 (3)−0.003 (2)−0.003 (2)0.001 (2)
C120.062 (3)0.059 (3)0.046 (3)0.005 (3)−0.003 (2)0.009 (2)
C130.071 (3)0.099 (4)0.044 (3)0.021 (4)0.006 (3)0.009 (3)
C140.063 (3)0.074 (3)0.040 (3)−0.002 (3)0.001 (2)0.005 (3)
C150.060 (3)0.074 (4)0.059 (3)0.005 (3)0.014 (3)0.001 (3)
C160.057 (3)0.070 (3)0.063 (3)−0.001 (3)0.005 (3)−0.007 (3)
C170.050 (3)0.042 (3)0.054 (3)−0.006 (2)−0.006 (2)−0.005 (2)
C180.071 (3)0.049 (3)0.063 (3)−0.013 (3)−0.011 (3)−0.008 (2)
C190.079 (4)0.043 (3)0.089 (4)−0.002 (3)−0.015 (3)−0.010 (3)
C200.055 (3)0.067 (4)0.065 (3)0.007 (3)−0.009 (3)−0.006 (3)
C210.055 (3)0.062 (3)0.052 (3)0.002 (3)0.000 (2)0.001 (3)
C220.079 (4)0.071 (4)0.099 (5)−0.021 (3)−0.014 (3)0.027 (3)
C230.049 (3)0.064 (3)0.053 (3)0.004 (3)0.004 (2)0.003 (3)
C240.086 (4)0.070 (4)0.074 (4)0.005 (4)−0.017 (3)0.012 (3)
C250.091 (5)0.077 (4)0.075 (4)0.009 (4)−0.025 (4)0.015 (3)
C260.058 (3)0.084 (4)0.052 (3)0.011 (3)−0.003 (3)0.002 (3)
C270.053 (3)0.082 (4)0.074 (4)−0.011 (3)−0.008 (3)0.004 (3)
C280.061 (3)0.065 (3)0.070 (3)−0.004 (3)−0.008 (3)0.020 (3)
Cl—C261.717 (6)C13—H13A0.9700
N—C211.284 (7)C13—H13B0.9700
N—O21.441 (5)C14—C151.515 (7)
O1—C201.218 (6)C14—H14A0.9700
C1—C31.549 (9)C14—H14B0.9700
C1—H1A0.9600C15—C161.507 (7)
C1—H1B0.9600C15—H15A0.9700
C1—H1C0.9600C15—H15B0.9700
O2—C201.348 (6)C16—C171.547 (7)
C2—C31.493 (8)C16—H16A0.9700
C2—H2A0.9600C16—H16B0.9700
C2—H2B0.9600C17—C201.517 (7)
C2—H2C0.9600C17—C191.535 (6)
C3—C41.497 (7)C18—H18A0.9600
C3—H3A0.9800C18—H18B0.9600
C4—C51.379 (7)C18—H18C0.9600
C4—C91.381 (7)C19—H19A0.9600
C5—C61.376 (7)C19—H19B0.9600
C5—H5A0.9300C19—H19C0.9600
C6—C71.399 (6)C21—C231.481 (7)
C6—H6A0.9300C21—C221.491 (8)
C7—C81.393 (6)C22—H22A0.9600
C7—C101.544 (7)C22—H22B0.9600
C8—C91.394 (7)C22—H22C0.9600
C8—C131.509 (6)C23—C241.383 (7)
C9—H9A0.9300C23—C281.406 (7)
C10—C181.515 (7)C24—C251.383 (8)
C10—C141.538 (6)C24—H24A0.9300
C10—C111.561 (6)C25—C261.385 (9)
C11—C121.528 (6)C25—H25A0.9300
C11—C171.543 (7)C26—C271.374 (8)
C11—H11A0.9800C27—C281.374 (7)
C12—C131.512 (7)C27—H27A0.9300
C12—H12A0.9700C28—H28A0.9300
C12—H12B0.9700
C21—N—O2108.6 (5)C10—C14—H14A109.2
C3—C1—H1A109.5C15—C14—H14B109.2
C3—C1—H1B109.5C10—C14—H14B109.2
H1A—C1—H1B109.5H14A—C14—H14B107.9
C3—C1—H1C109.5C16—C15—C14111.5 (4)
H1A—C1—H1C109.5C16—C15—H15A109.3
H1B—C1—H1C109.5C14—C15—H15A109.3
C20—O2—N113.6 (4)C16—C15—H15B109.3
C3—C2—H2A109.5C14—C15—H15B109.3
C3—C2—H2B109.5H15A—C15—H15B108.0
H2A—C2—H2B109.5C15—C16—C17113.1 (4)
C3—C2—H2C109.5C15—C16—H16A108.9
H2A—C2—H2C109.5C17—C16—H16A108.9
H2B—C2—H2C109.5C15—C16—H16B108.9
C2—C3—C4113.2 (5)C17—C16—H16B108.9
C2—C3—C1112.0 (6)H16A—C16—H16B107.8
C4—C3—C1111.0 (5)C20—C17—C19109.5 (4)
C2—C3—H3A106.7C20—C17—C11107.8 (4)
C4—C3—H3A106.7C19—C17—C11114.2 (4)
C1—C3—H3A106.7C20—C17—C16104.4 (4)
C5—C4—C9116.1 (5)C19—C17—C16112.2 (4)
C5—C4—C3121.9 (5)C11—C17—C16108.2 (4)
C9—C4—C3122.0 (5)C10—C18—H18A109.5
C6—C5—C4121.9 (5)C10—C18—H18B109.5
C6—C5—H5A119.0H18A—C18—H18B109.5
C4—C5—H5A119.0C10—C18—H18C109.5
C5—C6—C7121.9 (5)H18A—C18—H18C109.5
C5—C6—H6A119.0H18B—C18—H18C109.5
C7—C6—H6A119.0C17—C19—H19A109.5
C8—C7—C6117.1 (4)C17—C19—H19B109.5
C8—C7—C10122.1 (4)H19A—C19—H19B109.5
C6—C7—C10120.7 (4)C17—C19—H19C109.5
C7—C8—C9119.4 (4)H19A—C19—H19C109.5
C7—C8—C13122.5 (4)H19B—C19—H19C109.5
C9—C8—C13118.1 (4)O1—C20—O2122.3 (5)
C4—C9—C8123.7 (5)O1—C20—C17127.2 (5)
C4—C9—H9A118.2O2—C20—C17110.4 (5)
C8—C9—H9A118.2N—C21—C23114.6 (5)
C18—C10—C14109.1 (4)N—C21—C22125.3 (5)
C18—C10—C7106.9 (4)C23—C21—C22120.2 (5)
C14—C10—C7110.2 (4)C21—C22—H22A109.5
C18—C10—C11116.1 (4)C21—C22—H22B109.5
C14—C10—C11107.9 (4)H22A—C22—H22B109.5
C7—C10—C11106.5 (3)C21—C22—H22C109.5
C12—C11—C17113.9 (4)H22A—C22—H22C109.5
C12—C11—C10109.9 (4)H22B—C22—H22C109.5
C17—C11—C10116.5 (4)C24—C23—C28117.4 (5)
C12—C11—H11A105.1C24—C23—C21121.9 (5)
C17—C11—H11A105.1C28—C23—C21120.8 (5)
C10—C11—H11A105.1C25—C24—C23122.4 (6)
C13—C12—C11109.5 (4)C25—C24—H24A118.8
C13—C12—H12A109.8C23—C24—H24A118.8
C11—C12—H12A109.8C24—C25—C26118.3 (6)
C13—C12—H12B109.8C24—C25—H25A120.8
C11—C12—H12B109.8C26—C25—H25A120.8
H12A—C12—H12B108.2C27—C26—C25121.0 (5)
C8—C13—C12113.9 (4)C27—C26—Cl120.1 (5)
C8—C13—H13A108.8C25—C26—Cl118.8 (5)
C12—C13—H13A108.8C28—C27—C26119.9 (6)
C8—C13—H13B108.8C28—C27—H27A120.1
C12—C13—H13B108.8C26—C27—H27A120.1
H13A—C13—H13B107.7C27—C28—C23121.0 (5)
C15—C14—C10112.2 (4)C27—C28—H28A119.5
C15—C14—H14A109.2C23—C28—H28A119.5
C21—N—O2—C20148.1 (5)C11—C10—C14—C1554.1 (5)
C2—C3—C4—C5118.1 (6)C10—C14—C15—C16−58.8 (6)
C1—C3—C4—C5−115.0 (7)C14—C15—C16—C1757.7 (6)
C2—C3—C4—C9−59.0 (7)C12—C11—C17—C20−67.0 (5)
C1—C3—C4—C968.0 (8)C10—C11—C17—C20163.4 (4)
C9—C4—C5—C6−1.6 (7)C12—C11—C17—C1954.9 (6)
C3—C4—C5—C6−178.8 (5)C10—C11—C17—C19−74.7 (5)
C4—C5—C6—C71.9 (8)C12—C11—C17—C16−179.3 (4)
C5—C6—C7—C8−1.0 (7)C10—C11—C17—C1651.1 (5)
C5—C6—C7—C10174.3 (4)C15—C16—C17—C20−166.7 (5)
C6—C7—C8—C9−0.1 (7)C15—C16—C17—C1974.9 (6)
C10—C7—C8—C9−175.3 (4)C15—C16—C17—C11−52.1 (6)
C6—C7—C8—C13−179.4 (5)N—O2—C20—O1−9.4 (8)
C10—C7—C8—C135.4 (8)N—O2—C20—C17168.2 (4)
C5—C4—C9—C80.5 (8)C19—C17—C20—O1−147.7 (6)
C3—C4—C9—C8177.7 (5)C11—C17—C20—O1−23.0 (8)
C7—C8—C9—C40.3 (8)C16—C17—C20—O191.9 (7)
C13—C8—C9—C4179.6 (5)C19—C17—C20—O234.8 (6)
C8—C7—C10—C1897.1 (5)C11—C17—C20—O2159.5 (4)
C6—C7—C10—C18−77.9 (5)C16—C17—C20—O2−85.6 (5)
C8—C7—C10—C14−144.4 (5)O2—N—C21—C23175.4 (4)
C6—C7—C10—C1440.6 (6)O2—N—C21—C22−4.5 (8)
C8—C7—C10—C11−27.6 (6)N—C21—C23—C24165.3 (5)
C6—C7—C10—C11157.4 (4)C22—C21—C23—C24−14.8 (8)
C18—C10—C11—C12−61.1 (5)N—C21—C23—C28−13.0 (7)
C14—C10—C11—C12176.1 (4)C22—C21—C23—C28167.0 (5)
C7—C10—C11—C1257.8 (5)C28—C23—C24—C250.4 (8)
C18—C10—C11—C1770.3 (5)C21—C23—C24—C25−177.9 (5)
C14—C10—C11—C17−52.5 (5)C23—C24—C25—C260.3 (9)
C7—C10—C11—C17−170.8 (4)C24—C25—C26—C27−0.3 (9)
C17—C11—C12—C13159.6 (4)C24—C25—C26—Cl177.3 (5)
C10—C11—C12—C13−67.6 (5)C25—C26—C27—C28−0.5 (9)
C7—C8—C13—C12−12.1 (8)Cl—C26—C27—C28−178.0 (4)
C9—C8—C13—C12168.6 (5)C26—C27—C28—C231.2 (8)
C11—C12—C13—C842.0 (6)C24—C23—C28—C27−1.2 (8)
C18—C10—C14—C15−72.9 (5)C21—C23—C28—C27177.1 (5)
C7—C10—C14—C15170.0 (4)
  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Gastroprotective and cytotoxic effect of dehydroabietic acid derivatives.

Authors:  Beatriz Sepúlveda; Luis Astudillo; Jaime A Rodríguez; Tania Yáñez; Cristina Theoduloz; Guillermo Schmeda-Hirschmann
Journal:  Pharmacol Res       Date:  2005-08-24       Impact factor: 7.658

3.  Synthesis, structure analysis and cytotoxicity studies of novel unsymmetrically n,n'-substituted ureas from dehydroabietic Acid.

Authors:  Xiaoping Rao; Zhanqian Song; Ling He; Weihong Jia
Journal:  Chem Pharm Bull (Tokyo)       Date:  2008-11       Impact factor: 1.645

4.  Dehydro-abietic acid.

Authors:  Xiao-Ping Rao; Zhan-Qian Song; Shi-Bin Shang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-09-09
  4 in total

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