Literature DB >> 25309230

Crystal structure of 4-(2,2-di-methyl-propanamido)-pyridin-3-yl N,N-diiso-propyl-dithio-carbamate.

Gamal A El-Hiti1, Keith Smith2, Amany S Hegazy2, Mohammed Baashen3, Benson M Kariuki2.   

Abstract

In the title compound, C17H27N3OS2, the amide group is approximately coplanar with the pyridine ring [dihedral angle = 1.6 (1)°], whereas the di-thio-carbamate group is nearly perpendicular to the pyridine ring [dihedral angle = 76.7 (1)°]. In the crystal, pairs of weak C-H⋯O hydrogen bonds link the mol-ecules into inversion dimers.

Entities:  

Keywords:  crystal structure; di­thio­carbamate; hydrogen bonding; pyridine derivatives

Year:  2014        PMID: 25309230      PMCID: PMC4186077          DOI: 10.1107/S1600536814019321

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to pyridine derivatives, see: Joule & Mills (2000 ▶); Smith et al. (1999 ▶). For the synthesis of the title compound, see: Smith et al. (1988 ▶). For spectroscopic data for this compound, see: Smith et al. (1994 ▶). For routes to modify the pyridine ring, see: El-Hiti (2003 ▶); Turner (1983 ▶). For crystal structures of related compounds, see: El-Hiti et al. (2014 ▶); Koch et al. (2008 ▶); Mazik & Sicking (2004 ▶).

Experimental

Crystal data

C17H27N3OS2 M = 353.53 Triclinic, a = 7.9776 (7) Å b = 9.5412 (9) Å c = 13.0541 (14) Å α = 83.099 (8)° β = 83.227 (8)° γ = 84.608 (7)° V = 976.33 (17) Å3 Z = 2 Cu Kα radiation μ = 2.52 mm−1 T = 293 K 0.36 × 0.24 × 0.19 mm

Data collection

Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014 ▶) T min = 0.662, T max = 1.000 6616 measured reflections 3779 independent reflections 3391 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.211 S = 1.16 3779 reflections 215 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.29 e Å−3

Data collection: CrysAlis PRO (Agilent, 2014 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814019321/xu5816sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814019321/xu5816Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814019321/xu5816Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814019321/xu5816fig1.tif The symmetric unit of the title compound with atom labels and 50% probability displacement ellipsoids. Click here for additional data file. . DOI: 10.1107/S1600536814019321/xu5816fig2.tif Packing in the crystal structure showing C—H⋯O contacts as dotted lines with hydrogen atoms omitted for clarity. CCDC reference: 1021242 Additional supporting information: crystallographic information; 3D view; checkCIF report
C17H27N3OS2Z = 2
Mr = 353.53F(000) = 380
Triclinic, P1Dx = 1.203 Mg m3
a = 7.9776 (7) ÅCu Kα radiation, λ = 1.54184 Å
b = 9.5412 (9) ÅCell parameters from 3458 reflections
c = 13.0541 (14) Åθ = 4.7–73.3°
α = 83.099 (8)°µ = 2.52 mm1
β = 83.227 (8)°T = 293 K
γ = 84.608 (7)°Block, colourless
V = 976.33 (17) Å30.36 × 0.24 × 0.19 mm
Agilent SuperNova (Dual, Cu at zero, Atlas) diffractometer3391 reflections with I > 2σ(I)
Radiation source: sealed X-ray tubeRint = 0.021
ω scansθmax = 73.5°, θmin = 4.7°
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2014)h = −9→9
Tmin = 0.662, Tmax = 1.000k = −11→11
6616 measured reflectionsl = −11→16
3779 independent reflections
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.061H-atom parameters constrained
wR(F2) = 0.211w = 1/[σ2(Fo2) + (0.1014P)2 + 0.897P] where P = (Fo2 + 2Fc2)/3
S = 1.16(Δ/σ)max < 0.001
3779 reflectionsΔρmax = 0.39 e Å3
215 parametersΔρmin = −0.29 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
C10.0193 (4)0.7422 (4)0.4668 (2)0.0459 (7)
C20.1318 (4)0.6291 (3)0.4352 (2)0.0452 (7)
C30.2680 (5)0.5875 (4)0.4929 (3)0.0537 (8)
H30.34490.51210.47590.064*
C40.2866 (5)0.6596 (5)0.5752 (3)0.0635 (10)
H40.37920.63110.61200.076*
C50.0505 (5)0.8057 (4)0.5520 (3)0.0565 (8)
H5−0.02530.87980.57270.068*
C6−0.1194 (4)0.8903 (3)0.2919 (2)0.0419 (6)
C7−0.2165 (5)1.0250 (5)0.1370 (3)0.0658 (10)
H7−0.09631.04260.12930.079*
C8−0.3150 (9)1.1680 (6)0.1370 (5)0.0960 (17)
H8A−0.43411.15600.14410.144*
H8B−0.28471.22500.07290.144*
H8C−0.28891.21410.19390.144*
C9−0.2421 (9)0.9459 (7)0.0484 (4)0.1004 (18)
H9A−0.16240.86410.04670.151*
H9B−0.22501.0063−0.01560.151*
H9C−0.35520.91650.05730.151*
C10−0.4303 (4)0.9068 (4)0.2679 (3)0.0534 (8)
H10−0.49060.95530.21080.064*
C11−0.4589 (6)0.7522 (5)0.2694 (4)0.0733 (12)
H11A−0.40320.71740.20710.110*
H11B−0.57810.74180.27360.110*
H11C−0.41350.69900.32850.110*
C12−0.5115 (5)0.9746 (5)0.3641 (3)0.0704 (11)
H12A−0.47140.92200.42500.106*
H12B−0.63240.97390.36840.106*
H12C−0.48161.07050.35920.106*
C130.2026 (5)0.4709 (4)0.2956 (3)0.0554 (8)
C140.1560 (6)0.4522 (4)0.1882 (3)0.0613 (9)
C15−0.0198 (8)0.5172 (7)0.1668 (4)0.0987 (18)
H15A−0.10280.47670.21830.148*
H15B−0.04190.49830.09920.148*
H15C−0.02550.61770.16930.148*
C160.2920 (10)0.5217 (8)0.1114 (4)0.113 (2)
H16A0.28060.50050.04270.169*
H16B0.40200.48590.13010.169*
H16C0.27850.62250.11340.169*
C170.1623 (8)0.2942 (5)0.1788 (4)0.0875 (15)
H17A0.07840.25200.22890.131*
H17B0.27250.25070.19140.131*
H17C0.13990.28030.11020.131*
N10.1823 (5)0.7673 (4)0.6064 (3)0.0678 (9)
N20.1026 (4)0.5683 (3)0.3481 (2)0.0523 (7)
H20.00790.59610.32390.063*
N3−0.2495 (3)0.9371 (3)0.2384 (2)0.0467 (6)
O20.3244 (5)0.4055 (4)0.3306 (3)0.0946 (12)
S1−0.17473 (10)0.79230 (10)0.41574 (6)0.0518 (3)
S20.08414 (10)0.91374 (10)0.25296 (7)0.0535 (3)
U11U22U33U12U13U23
C10.0432 (16)0.0523 (17)0.0417 (15)−0.0037 (13)−0.0063 (12)−0.0018 (13)
C20.0450 (17)0.0487 (17)0.0425 (15)−0.0054 (13)−0.0070 (13)−0.0038 (12)
C30.0479 (19)0.061 (2)0.0522 (18)0.0012 (15)−0.0112 (15)−0.0045 (15)
C40.055 (2)0.083 (3)0.055 (2)−0.0003 (19)−0.0214 (17)−0.0078 (18)
C50.058 (2)0.064 (2)0.0489 (18)0.0016 (16)−0.0091 (15)−0.0113 (15)
C60.0387 (15)0.0442 (15)0.0439 (15)−0.0038 (12)−0.0051 (12)−0.0079 (12)
C70.053 (2)0.087 (3)0.055 (2)−0.0067 (19)−0.0119 (16)0.0123 (19)
C80.117 (5)0.075 (3)0.093 (4)−0.006 (3)−0.029 (3)0.017 (3)
C90.125 (5)0.124 (5)0.048 (2)0.006 (4)−0.005 (3)−0.007 (3)
C100.0340 (16)0.072 (2)0.0564 (19)−0.0040 (15)−0.0084 (14)−0.0128 (16)
C110.054 (2)0.082 (3)0.090 (3)−0.021 (2)−0.011 (2)−0.019 (2)
C120.046 (2)0.097 (3)0.070 (2)0.007 (2)−0.0047 (17)−0.025 (2)
C130.056 (2)0.0511 (18)0.061 (2)0.0001 (15)−0.0111 (16)−0.0131 (15)
C140.072 (2)0.059 (2)0.055 (2)−0.0088 (18)−0.0056 (18)−0.0155 (16)
C150.111 (4)0.120 (4)0.076 (3)0.014 (3)−0.046 (3)−0.040 (3)
C160.142 (6)0.136 (5)0.066 (3)−0.069 (5)0.002 (3)−0.005 (3)
C170.111 (4)0.071 (3)0.087 (3)−0.011 (3)−0.009 (3)−0.033 (2)
N10.068 (2)0.084 (2)0.0559 (18)−0.0008 (18)−0.0189 (16)−0.0206 (16)
N20.0496 (16)0.0579 (16)0.0520 (15)0.0043 (13)−0.0158 (12)−0.0134 (13)
N30.0377 (13)0.0586 (16)0.0447 (14)−0.0029 (11)−0.0089 (11)−0.0055 (11)
O20.090 (2)0.098 (2)0.102 (2)0.042 (2)−0.041 (2)−0.045 (2)
S10.0388 (4)0.0662 (5)0.0473 (5)−0.0015 (3)−0.0035 (3)0.0026 (4)
S20.0376 (4)0.0614 (5)0.0600 (5)−0.0087 (3)−0.0049 (3)0.0029 (4)
C1—C51.386 (5)C10—C111.511 (6)
C1—C21.406 (5)C10—C121.530 (5)
C1—S11.760 (3)C10—H100.9800
C2—N21.390 (4)C11—H11A0.9600
C2—C31.395 (5)C11—H11B0.9600
C3—C41.373 (5)C11—H11C0.9600
C3—H30.9300C12—H12A0.9600
C4—N11.332 (5)C12—H12B0.9600
C4—H40.9300C12—H12C0.9600
C5—N11.336 (5)C13—O21.210 (5)
C5—H50.9300C13—N21.361 (5)
C6—N31.331 (4)C13—C141.527 (5)
C6—S21.671 (3)C14—C151.522 (7)
C6—S11.797 (3)C14—C171.523 (6)
C7—N31.489 (5)C14—C161.530 (7)
C7—C91.498 (7)C15—H15A0.9600
C7—C81.509 (7)C15—H15B0.9600
C7—H70.9800C15—H15C0.9600
C8—H8A0.9600C16—H16A0.9600
C8—H8B0.9600C16—H16B0.9600
C8—H8C0.9600C16—H16C0.9600
C9—H9A0.9600C17—H17A0.9600
C9—H9B0.9600C17—H17B0.9600
C9—H9C0.9600C17—H17C0.9600
C10—N31.494 (4)N2—H20.8600
C5—C1—C2118.5 (3)C10—C11—H11C109.5
C5—C1—S1117.4 (3)H11A—C11—H11C109.5
C2—C1—S1123.5 (2)H11B—C11—H11C109.5
N2—C2—C3124.4 (3)C10—C12—H12A109.5
N2—C2—C1118.3 (3)C10—C12—H12B109.5
C3—C2—C1117.3 (3)H12A—C12—H12B109.5
C4—C3—C2118.8 (3)C10—C12—H12C109.5
C4—C3—H3120.6H12A—C12—H12C109.5
C2—C3—H3120.6H12B—C12—H12C109.5
N1—C4—C3125.0 (3)O2—C13—N2122.1 (4)
N1—C4—H4117.5O2—C13—C14121.6 (4)
C3—C4—H4117.5N2—C13—C14116.2 (3)
N1—C5—C1124.3 (4)C15—C14—C17107.8 (4)
N1—C5—H5117.9C15—C14—C13114.1 (3)
C1—C5—H5117.9C17—C14—C13108.3 (4)
N3—C6—S2125.8 (2)C15—C14—C16110.6 (5)
N3—C6—S1115.0 (2)C17—C14—C16110.7 (4)
S2—C6—S1119.17 (18)C13—C14—C16105.3 (4)
N3—C7—C9111.2 (4)C14—C15—H15A109.5
N3—C7—C8111.3 (4)C14—C15—H15B109.5
C9—C7—C8114.1 (4)H15A—C15—H15B109.5
N3—C7—H7106.6C14—C15—H15C109.5
C9—C7—H7106.6H15A—C15—H15C109.5
C8—C7—H7106.6H15B—C15—H15C109.5
C7—C8—H8A109.5C14—C16—H16A109.5
C7—C8—H8B109.5C14—C16—H16B109.5
H8A—C8—H8B109.5H16A—C16—H16B109.5
C7—C8—H8C109.5C14—C16—H16C109.5
H8A—C8—H8C109.5H16A—C16—H16C109.5
H8B—C8—H8C109.5H16B—C16—H16C109.5
C7—C9—H9A109.5C14—C17—H17A109.5
C7—C9—H9B109.5C14—C17—H17B109.5
H9A—C9—H9B109.5H17A—C17—H17B109.5
C7—C9—H9C109.5C14—C17—H17C109.5
H9A—C9—H9C109.5H17A—C17—H17C109.5
H9B—C9—H9C109.5H17B—C17—H17C109.5
N3—C10—C11113.1 (3)C4—N1—C5116.0 (3)
N3—C10—C12113.3 (3)C13—N2—C2129.2 (3)
C11—C10—C12114.6 (4)C13—N2—H2115.4
N3—C10—H10104.9C2—N2—H2115.4
C11—C10—H10104.9C6—N3—C7118.8 (3)
C12—C10—H10104.9C6—N3—C10126.5 (3)
C10—C11—H11A109.5C7—N3—C10114.7 (3)
C10—C11—H11B109.5C1—S1—C6104.98 (15)
H11A—C11—H11B109.5
D—H···AD—HH···AD···AD—H···A
C4—H4···O2i0.932.543.447 (5)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4⋯O2i 0.932.543.447 (5)164

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  tert-Butyl N-(4-methyl-2-pyrid-yl)-carbamate.

Authors:  Pierre Koch; Dieter Schollmeyer; Stefan Laufer
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-10-31

3.  2,2-Dimethyl-N-(4-methyl-pyridin-2-yl)propanamide.

Authors:  Gamal A El-Hiti; Keith Smith; Asim A Balakit; Amany S Hegazy; Benson M Kariuki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-02-26
  3 in total

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