Literature DB >> 25309226

Crystal structure of 3,5-bis-(4-chloro-phen-yl)-1-propyl-1,3,5-tri-aza-cyclo-hexane.

Leila Lefrada1, Ahcene Bouchemma1, Sofiane Bouacida2, Nicolas Claiser3, Mohamed Souhassou3.   

Abstract

In the title mol-ecule, C18H21Cl2N3, the tri-aza-cyclo-hexane ring adopts a chair conformation with both 4-chloro-phenyl substituents in axial positions and the propyl group in an equatorial site. The dihedral angle between the planes of the benzene rings is 49.5 (1)°. In the crystal, mol-ecules are arranged in a head-to-tail fashion, forming columns along [010], and pairs of weak C-H⋯π inter-actions form inversion dimers between columns.

Entities:  

Keywords:  C—H⋯π inter­actions; crystal structure; tri­aza­cyclo­hexa­ne

Year:  2014        PMID: 25309226      PMCID: PMC4186157          DOI: 10.1107/S1600536814019060

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For conformations of 1,3,5-triaryl derivatives of 1,3,5-tri­aza­cyclo­hexane, see: Baker et al. (1978 ▶); Bouchemma et al. (1989 ▶, 1990 ▶); Bushweller (1995 ▶); Kleinpeter et al. (2005 ▶); Duke et al. (1973 ▶); Gilardi et al. (2003 ▶); Giumanini et al. (1985 ▶); Latreche et al. (2006 ▶); Mloston et al. (2006 ▶); Freeman et al. (2005 ▶); Wiberg et al. (1999 ▶).

Experimental

Crystal data

C18H21Cl2N3 M = 350.28 Triclinic, a = 6.0785 (3) Å b = 10.3190 (6) Å c = 14.4360 (8) Å α = 91.570 (3)° β = 91.946 (2)° γ = 99.055 (3)° V = 893.19 (8) Å3 Z = 2 Mo Kα radiation μ = 0.37 mm−1 T = 295 K 0.22 × 0.13 × 0.07 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (Blessing, 1995 ▶) T min = 0.274, T max = 0.467 13643 measured reflections 3448 independent reflections 2751 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.049 wR(F 2) = 0.142 S = 1.03 3448 reflections 209 parameters H-atom parameters constrained Δρmax = 0.45 e Å−3 Δρmin = −0.25 e Å−3

Data collection: COLLECT (Nonius, 1997 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SIR2002 (Burla et al., 2005 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg & Berndt, 2001 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S1600536814019060/lh5723sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814019060/lh5723Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814019060/lh5723Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814019060/lh5723fig1.tif The mol­ecular structure of the title compound with displacement ellipsoids drawn at the 50% probability level. Click here for additional data file. . DOI: 10.1107/S1600536814019060/lh5723fig2.tif Part of the crystal structure of the title compound showing the ’head to tail’ arrangement of mol­ecules arranged in columns. CCDC reference: 1020727 Additional supporting information: crystallographic information; 3D view; checkCIF report
C18H21Cl2N3Z = 2
Mr = 350.28F(000) = 368
Triclinic, P1Dx = 1.302 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.0785 (3) ÅCell parameters from 13346 reflections
b = 10.3190 (6) Åθ = 1.5–27.3°
c = 14.4360 (8) ŵ = 0.37 mm1
α = 91.570 (3)°T = 295 K
β = 91.946 (2)°Prism, colourless
γ = 99.055 (3)°0.22 × 0.13 × 0.07 mm
V = 893.19 (8) Å3
Nonius KappaCCD diffractometer2751 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.016
ω and φ scansθmax = 27.3°, θmin = 1.4°
Absorption correction: multi-scan (Blessing, 1995)h = −7→7
Tmin = 0.274, Tmax = 0.467k = −12→12
13643 measured reflectionsl = −17→17
3448 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.049Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.142H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0652P)2 + 0.413P] where P = (Fo2 + 2Fc2)/3
3448 reflections(Δ/σ)max < 0.001
209 parametersΔρmax = 0.45 e Å3
0 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C1−0.3001 (4)0.4766 (3)0.25020 (16)0.0613 (6)
H1A−0.35470.3830.24590.074*
H1B−0.42810.52210.25050.074*
C2−0.0783 (4)0.6456 (2)0.34207 (17)0.0633 (6)
H2A0.01030.66530.39930.076*
H2B−0.19970.69640.34320.076*
C3−0.0772 (5)0.6525 (2)0.17830 (18)0.0652 (6)
H3A−0.19790.70390.17780.078*
H3B0.0130.67670.12540.078*
C40.1485 (6)0.8253 (3)0.2756 (2)0.0847 (8)
H4A0.02830.87510.26380.102*
H4B0.20190.84380.33940.102*
C50.3281 (8)0.8689 (4)0.2147 (3)0.1185 (14)
H5A0.26880.8650.15130.142*
H5B0.43680.80960.21850.142*
C60.4450 (8)1.0093 (4)0.2390 (3)0.1321 (17)
H6A0.33661.06770.23950.198*
H6B0.55311.03640.19350.198*
H6C0.51841.01170.29910.198*
C11−0.0360 (4)0.4255 (2)0.13332 (14)0.0505 (5)
C120.1801 (4)0.4642 (2)0.10651 (16)0.0556 (5)
H120.24670.55110.11660.067*
C130.2992 (4)0.3762 (2)0.06492 (16)0.0590 (6)
H130.44360.40410.04650.071*
C140.2027 (4)0.2473 (2)0.05101 (16)0.0585 (6)
C15−0.0100 (4)0.2056 (2)0.07759 (19)0.0691 (7)
H15−0.07420.11810.06850.083*
C16−0.1281 (4)0.2940 (2)0.11776 (19)0.0666 (6)
H16−0.27320.26530.1350.08*
C21−0.0324 (4)0.4175 (2)0.36755 (14)0.0491 (5)
C22−0.1257 (4)0.2865 (2)0.37598 (18)0.0622 (6)
H22−0.27350.25890.35660.075*
C23−0.0036 (4)0.1967 (2)0.41250 (19)0.0660 (6)
H23−0.06820.10940.41730.079*
C240.2138 (4)0.2375 (2)0.44168 (16)0.0583 (6)
C250.3124 (4)0.3650 (2)0.43325 (16)0.0565 (5)
H250.46050.39130.45260.068*
C260.1900 (4)0.4544 (2)0.39570 (15)0.0536 (5)
H260.25790.54080.38920.064*
N1−0.1697 (3)0.51418 (19)0.16948 (13)0.0578 (5)
N2−0.1687 (3)0.50789 (19)0.33683 (13)0.0561 (5)
N30.0600 (4)0.68403 (18)0.26379 (14)0.0615 (5)
Cl10.34990 (13)0.13680 (7)−0.00400 (5)0.0841 (3)
Cl20.36408 (14)0.12627 (7)0.49405 (6)0.0865 (3)
U11U22U33U12U13U23
C10.0497 (13)0.0749 (16)0.0606 (14)0.0138 (11)0.0016 (10)0.0033 (11)
C20.0733 (16)0.0592 (14)0.0614 (14)0.0235 (12)0.0035 (12)−0.0017 (11)
C30.0750 (16)0.0586 (14)0.0659 (15)0.0211 (12)0.0029 (12)0.0117 (11)
C40.108 (2)0.0557 (15)0.090 (2)0.0095 (15)0.0082 (18)0.0044 (14)
C50.146 (4)0.088 (2)0.115 (3)−0.010 (2)0.040 (3)−0.009 (2)
C60.173 (4)0.088 (3)0.115 (3)−0.044 (3)0.017 (3)0.006 (2)
C110.0516 (12)0.0559 (12)0.0421 (10)0.0039 (10)−0.0054 (9)0.0039 (9)
C120.0574 (13)0.0499 (12)0.0562 (12)−0.0013 (10)−0.0019 (10)0.0039 (10)
C130.0545 (13)0.0635 (14)0.0572 (13)0.0030 (11)0.0037 (10)0.0052 (11)
C140.0639 (14)0.0586 (13)0.0519 (12)0.0084 (11)−0.0040 (10)−0.0039 (10)
C150.0691 (16)0.0530 (14)0.0799 (17)−0.0045 (12)−0.0021 (13)−0.0076 (12)
C160.0536 (13)0.0641 (15)0.0778 (16)−0.0036 (11)0.0046 (12)−0.0022 (12)
C210.0510 (12)0.0533 (12)0.0431 (11)0.0077 (9)0.0077 (9)−0.0002 (9)
C220.0524 (13)0.0587 (14)0.0725 (15)−0.0012 (11)0.0051 (11)0.0020 (11)
C230.0690 (16)0.0492 (13)0.0782 (16)0.0015 (11)0.0125 (13)0.0071 (11)
C240.0664 (15)0.0554 (13)0.0564 (13)0.0164 (11)0.0126 (11)0.0087 (10)
C250.0528 (12)0.0610 (13)0.0561 (13)0.0102 (10)0.0020 (10)0.0024 (10)
C260.0562 (13)0.0486 (12)0.0541 (12)0.0018 (10)0.0059 (10)0.0023 (9)
N10.0583 (11)0.0619 (11)0.0538 (11)0.0113 (9)−0.0016 (8)0.0046 (9)
N20.0567 (11)0.0603 (11)0.0525 (10)0.0130 (9)0.0024 (8)0.0000 (8)
N30.0734 (13)0.0446 (10)0.0665 (12)0.0104 (9)−0.0022 (10)0.0023 (9)
Cl10.0883 (5)0.0780 (5)0.0872 (5)0.0207 (4)0.0049 (4)−0.0199 (4)
Cl20.0940 (5)0.0765 (5)0.0981 (6)0.0357 (4)0.0131 (4)0.0278 (4)
C1—N11.458 (3)C11—C161.393 (3)
C1—N21.461 (3)C11—N11.417 (3)
C1—H1A0.97C12—C131.384 (3)
C1—H1B0.97C12—H120.93
C2—N21.439 (3)C13—C141.372 (3)
C2—N31.458 (3)C13—H130.93
C2—H2A0.97C14—C151.368 (4)
C2—H2B0.97C14—Cl11.747 (2)
C3—N11.450 (3)C15—C161.374 (4)
C3—N31.465 (3)C15—H150.93
C3—H3A0.97C16—H160.93
C3—H3B0.97C21—C261.389 (3)
C4—C51.448 (5)C21—C221.392 (3)
C4—N31.475 (3)C21—N21.412 (3)
C4—H4A0.97C22—C231.380 (4)
C4—H4B0.97C22—H220.93
C5—C61.536 (4)C23—C241.371 (4)
C5—H5A0.97C23—H230.93
C5—H5B0.97C24—C251.367 (3)
C6—H6A0.96C24—Cl21.747 (2)
C6—H6B0.96C25—C261.384 (3)
C6—H6C0.96C25—H250.93
C11—C121.383 (3)C26—H260.93
N1—C1—N2111.86 (19)C13—C12—H12119.3
N1—C1—H1A109.2C14—C13—C12119.6 (2)
N2—C1—H1A109.2C14—C13—H13120.2
N1—C1—H1B109.2C12—C13—H13120.2
N2—C1—H1B109.2C15—C14—C13120.5 (2)
H1A—C1—H1B107.9C15—C14—Cl1119.76 (19)
N2—C2—N3111.81 (18)C13—C14—Cl1119.70 (19)
N2—C2—H2A109.3C14—C15—C16119.6 (2)
N3—C2—H2A109.3C14—C15—H15120.2
N2—C2—H2B109.3C16—C15—H15120.2
N3—C2—H2B109.3C15—C16—C11121.7 (2)
H2A—C2—H2B107.9C15—C16—H16119.1
N1—C3—N3112.04 (19)C11—C16—H16119.1
N1—C3—H3A109.2C26—C21—C22117.6 (2)
N3—C3—H3A109.2C26—C21—N2123.0 (2)
N1—C3—H3B109.2C22—C21—N2119.3 (2)
N3—C3—H3B109.2C23—C22—C21121.4 (2)
H3A—C3—H3B107.9C23—C22—H22119.3
C5—C4—N3113.4 (3)C21—C22—H22119.3
C5—C4—H4A108.9C24—C23—C22119.4 (2)
N3—C4—H4A108.9C24—C23—H23120.3
C5—C4—H4B108.9C22—C23—H23120.3
N3—C4—H4B108.9C25—C24—C23120.9 (2)
H4A—C4—H4B107.7C25—C24—Cl2119.54 (19)
C4—C5—C6112.8 (3)C23—C24—Cl2119.48 (19)
C4—C5—H5A109C24—C25—C26119.5 (2)
C6—C5—H5A109C24—C25—H25120.2
C4—C5—H5B109C26—C25—H25120.2
C6—C5—H5B109C25—C26—C21121.2 (2)
H5A—C5—H5B107.8C25—C26—H26119.4
C5—C6—H6A109.5C21—C26—H26119.4
C5—C6—H6B109.5C11—N1—C3118.73 (19)
H6A—C6—H6B109.5C11—N1—C1118.44 (19)
C5—C6—H6C109.5C3—N1—C1109.38 (19)
H6A—C6—H6C109.5C21—N2—C2118.41 (19)
H6B—C6—H6C109.5C21—N2—C1118.07 (18)
C12—C11—C16117.3 (2)C2—N2—C1109.76 (19)
C12—C11—N1123.2 (2)C2—N3—C3108.2 (2)
C16—C11—N1119.4 (2)C2—N3—C4108.2 (2)
C11—C12—C13121.3 (2)C3—N3—C4112.7 (2)
C11—C12—H12119.3
N3—C4—C5—C6−170.1 (3)C16—C11—N1—C3−175.1 (2)
C16—C11—C12—C130.7 (3)C12—C11—N1—C1−136.1 (2)
N1—C11—C12—C13−175.0 (2)C16—C11—N1—C148.3 (3)
C11—C12—C13—C14−0.9 (3)N3—C3—N1—C11−83.0 (3)
C12—C13—C14—C150.2 (4)N3—C3—N1—C157.2 (3)
C12—C13—C14—Cl1178.45 (18)N2—C1—N1—C1184.7 (2)
C13—C14—C15—C160.6 (4)N2—C1—N1—C3−55.7 (3)
Cl1—C14—C15—C16−177.6 (2)C26—C21—N2—C2−5.2 (3)
C14—C15—C16—C11−0.8 (4)C22—C21—N2—C2170.6 (2)
C12—C11—C16—C150.1 (4)C26—C21—N2—C1131.2 (2)
N1—C11—C16—C15176.0 (2)C22—C21—N2—C1−53.0 (3)
C26—C21—C22—C231.2 (3)N3—C2—N2—C2181.6 (2)
N2—C21—C22—C23−174.9 (2)N3—C2—N2—C1−58.1 (3)
C21—C22—C23—C240.4 (4)N1—C1—N2—C21−83.5 (3)
C22—C23—C24—C25−1.4 (4)N1—C1—N2—C256.4 (3)
C22—C23—C24—Cl2176.34 (19)N2—C2—N3—C358.6 (2)
C23—C24—C25—C260.7 (4)N2—C2—N3—C4−179.0 (2)
Cl2—C24—C25—C26−177.02 (17)N1—C3—N3—C2−58.3 (3)
C24—C25—C26—C210.9 (3)N1—C3—N3—C4−177.8 (2)
C22—C21—C26—C25−1.8 (3)C5—C4—N3—C2166.4 (3)
N2—C21—C26—C25174.05 (19)C5—C4—N3—C3−74.0 (4)
C12—C11—N1—C30.5 (3)
D—H···AD—HH···AD···AD—H···A
C2—H2A···Cgi0.962.923.668 (3)134
Table 1

Hydrogen-bond geometry (Å, °)

Cg is centroid of C21–C26 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2ACg i 0.962.923.668 (3)134

Symmetry code: (i) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  R H Blessing
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