Literature DB >> 25309222

Crystal structure of 3-methyl-2,6-bis-(4-methyl-1,3-thia-zol-5-yl)piperidin-4-one.

A Manimaran1, K Sethusankar2, S Ganesan1, S Ananthan3.   

Abstract

In the title compound, C14H17N3OS2, the central piperidinone ring adopts a chair conformation and the thia-zole rings are inclined to its mean plane by 80.16 (12) and 67.15 (12)°. The O atom and methyl group C atom deviate significantly from the mean plane of the central piperidinone ring, by 0.8138 (2) and 0.3175 (2) Å, respectively. The dihedral angle between the thia-zole rings is 51.88 (13)°. In the crystal, mol-ecules are linked via C-H⋯O hydrogen bonds, forming zigzag C(10) chains running parallel to [001].

Entities:  

Keywords:  crystal structure; piperidine; thia­zole; zigzag chains

Year:  2014        PMID: 25309222      PMCID: PMC4186075          DOI: 10.1107/S1600536814018856

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological and pharmaceutical applications of piperidino­nes and thia­zoles, see: Ganellin & Spickett (1965 ▶). For the synthesis of substituted piperidin-4-ones and their derivatives, see: Noller & Baliah (1948 ▶). For related structures, see: Gayathri et al. (2008 ▶); Nithya et al. (2009 ▶).

Experimental

Crystal data

C14H17N3OS2 M = 307.43 Orthorhombic, a = 11.389 (5) Å b = 12.660 (5) Å c = 21.667 (5) Å V = 3124 (2) Å3 Z = 8 Mo Kα radiation μ = 0.34 mm−1 T = 296 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.903, T max = 0.934 19116 measured reflections 3762 independent reflections 2539 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.150 S = 1.00 3762 reflections 184 parameters H-atom parameters constrained Δρmax = 0.52 e Å−3 Δρmin = −0.47 e Å−3

Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814018856/su2768sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814018856/su2768Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814018856/su2768Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814018856/su2768fig1.tif The mol­ecular structure of the title mol­ecular, with atom labelling. The displacement ellipsoids are drawn at the 30% probability level. Click here for additional data file. b . DOI: 10.1107/S1600536814018856/su2768fig2.tif Part of the crystal packing of the title compound viewed along the b axis. Hydrogen bonds are shown as dashed lines; see Table 1 for details. CCDC reference: 1020191 Additional supporting information: crystallographic information; 3D view; checkCIF report
C14H17N3OS2F(000) = 1296
Mr = 307.43Dx = 1.307 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2539 reflections
a = 11.389 (5) Åθ = 2.6–28.4°
b = 12.660 (5) ŵ = 0.34 mm1
c = 21.667 (5) ÅT = 296 K
V = 3124 (2) Å3Block, colourless
Z = 80.30 × 0.25 × 0.20 mm
Bruker Kappa APEXII CCD diffractometer3762 independent reflections
Radiation source: fine-focus sealed tube2539 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
ω and φ scansθmax = 28.4°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −15→15
Tmin = 0.903, Tmax = 0.934k = −16→14
19116 measured reflectionsl = −27→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.048Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.150H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.073P)2 + 1.5978P] where P = (Fo2 + 2Fc2)/3
3762 reflections(Δ/σ)max = 0.001
184 parametersΔρmax = 0.52 e Å3
0 restraintsΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2579 (2)−0.01628 (17)0.49282 (10)0.0398 (5)
H10.3299−0.04820.47650.048*
C20.1630 (2)−0.10230 (18)0.49779 (11)0.0494 (6)
H2A0.1914−0.15950.52350.059*
H2B0.0933−0.07300.51700.059*
C30.1325 (2)−0.14405 (17)0.43518 (11)0.0447 (5)
C40.1030 (2)−0.06171 (17)0.38720 (11)0.0423 (5)
H40.0300−0.02750.40030.051*
C50.19957 (19)0.02385 (17)0.38724 (10)0.0393 (5)
H50.2730−0.00790.37270.047*
C60.1691 (2)0.11454 (18)0.34598 (11)0.0435 (5)
C70.2132 (2)0.1418 (2)0.29028 (11)0.0514 (6)
C80.0832 (3)0.2696 (2)0.29990 (14)0.0647 (8)
H80.04030.32950.28950.078*
C90.2859 (3)0.1374 (3)0.64598 (14)0.0684 (8)
H90.27250.18490.67800.082*
C100.3678 (2)0.0071 (2)0.59575 (11)0.0492 (6)
C110.2849 (2)0.03318 (17)0.55366 (10)0.0404 (5)
C120.4537 (3)−0.0816 (3)0.59110 (16)0.0757 (9)
H12A0.4317−0.13680.61920.114*
H12B0.5307−0.05640.60140.114*
H12C0.4538−0.10870.54970.114*
C130.3096 (3)0.0875 (3)0.25606 (15)0.0752 (9)
H13A0.37970.12940.25830.113*
H13B0.28710.07870.21370.113*
H13C0.32390.01960.27420.113*
C140.0807 (3)−0.1090 (2)0.32444 (12)0.0630 (7)
H14A0.1513−0.14200.30960.095*
H14B0.0573−0.05440.29630.095*
H14C0.0195−0.16090.32740.095*
N10.21742 (16)0.06327 (14)0.44979 (8)0.0402 (4)
H1A0.20500.12790.46020.048*
N20.1627 (2)0.2306 (2)0.26420 (11)0.0649 (6)
N30.3680 (2)0.0677 (2)0.64846 (10)0.0656 (6)
O10.13353 (18)−0.23686 (14)0.42350 (9)0.0653 (5)
S10.20268 (6)0.13746 (6)0.58011 (3)0.0607 (2)
S20.06218 (6)0.20349 (6)0.36761 (3)0.0582 (2)
U11U22U33U12U13U23
C10.0485 (12)0.0321 (11)0.0387 (12)0.0025 (9)−0.0018 (9)−0.0007 (9)
C20.0679 (15)0.0339 (11)0.0464 (14)−0.0065 (11)−0.0023 (11)0.0072 (10)
C30.0467 (12)0.0337 (12)0.0537 (14)−0.0044 (9)0.0014 (10)−0.0022 (10)
C40.0451 (11)0.0376 (11)0.0443 (13)−0.0024 (9)−0.0015 (10)−0.0042 (9)
C50.0441 (11)0.0364 (11)0.0375 (12)−0.0004 (9)−0.0007 (9)−0.0003 (9)
C60.0492 (12)0.0417 (12)0.0397 (12)−0.0049 (10)−0.0033 (10)0.0007 (9)
C70.0618 (15)0.0530 (14)0.0393 (14)−0.0086 (12)−0.0001 (11)0.0052 (11)
C80.0773 (18)0.0585 (17)0.0583 (18)0.0041 (14)−0.0084 (15)0.0211 (13)
C90.088 (2)0.0675 (19)0.0494 (17)−0.0164 (17)0.0147 (14)−0.0199 (14)
C100.0536 (13)0.0494 (14)0.0446 (14)−0.0061 (11)−0.0038 (11)−0.0004 (10)
C110.0491 (12)0.0345 (11)0.0377 (12)−0.0008 (9)0.0028 (9)−0.0007 (9)
C120.0685 (18)0.074 (2)0.085 (2)0.0149 (16)−0.0254 (16)−0.0040 (17)
C130.085 (2)0.084 (2)0.0569 (18)−0.0011 (17)0.0187 (15)0.0051 (16)
C140.0793 (18)0.0601 (17)0.0496 (16)−0.0130 (14)−0.0044 (13)−0.0115 (13)
N10.0541 (11)0.0291 (9)0.0376 (10)0.0013 (8)−0.0033 (8)−0.0005 (7)
N20.0783 (15)0.0663 (15)0.0502 (14)−0.0056 (13)−0.0050 (12)0.0214 (11)
N30.0822 (17)0.0697 (16)0.0449 (13)−0.0143 (14)−0.0069 (12)−0.0080 (11)
O10.0847 (14)0.0328 (9)0.0784 (14)−0.0010 (9)−0.0094 (11)−0.0062 (8)
S10.0656 (4)0.0514 (4)0.0651 (5)0.0086 (3)0.0065 (3)−0.0160 (3)
S20.0670 (4)0.0539 (4)0.0538 (4)0.0132 (3)0.0032 (3)0.0126 (3)
C1—N11.448 (3)C8—S21.706 (3)
C1—C111.491 (3)C8—H80.9300
C1—C21.538 (3)C9—N31.287 (4)
C1—H10.9800C9—S11.713 (3)
C2—C31.497 (3)C9—H90.9300
C2—H2A0.9700C10—C111.354 (3)
C2—H2B0.9700C10—N31.376 (3)
C3—O11.202 (3)C10—C121.493 (4)
C3—C41.510 (3)C11—S11.717 (2)
C4—C141.507 (3)C12—H12A0.9600
C4—C51.543 (3)C12—H12B0.9600
C4—H40.9800C12—H12C0.9600
C5—N11.458 (3)C13—H13A0.9600
C5—C61.496 (3)C13—H13B0.9600
C5—H50.9800C13—H13C0.9600
C6—C71.352 (3)C14—H14A0.9600
C6—S21.723 (3)C14—H14B0.9600
C7—N21.384 (3)C14—H14C0.9600
C7—C131.492 (4)N1—H1A0.8600
C8—N21.289 (4)
N1—C1—C11110.04 (18)S2—C8—H8122.4
N1—C1—C2108.27 (18)N3—C9—S1115.9 (2)
C11—C1—C2112.34 (19)N3—C9—H9122.0
N1—C1—H1108.7S1—C9—H9122.0
C11—C1—H1108.7C11—C10—N3115.1 (2)
C2—C1—H1108.7C11—C10—C12126.5 (2)
C3—C2—C1110.46 (19)N3—C10—C12118.3 (2)
C3—C2—H2A109.6C10—C11—C1129.5 (2)
C1—C2—H2A109.6C10—C11—S1110.05 (18)
C3—C2—H2B109.6C1—C11—S1120.38 (17)
C1—C2—H2B109.6C10—C12—H12A109.5
H2A—C2—H2B108.1C10—C12—H12B109.5
O1—C3—C2122.3 (2)H12A—C12—H12B109.5
O1—C3—C4122.1 (2)C10—C12—H12C109.5
C2—C3—C4115.58 (19)H12A—C12—H12C109.5
C14—C4—C3112.6 (2)H12B—C12—H12C109.5
C14—C4—C5113.6 (2)C7—C13—H13A109.5
C3—C4—C5109.01 (18)C7—C13—H13B109.5
C14—C4—H4107.1H13A—C13—H13B109.5
C3—C4—H4107.1C7—C13—H13C109.5
C5—C4—H4107.1H13A—C13—H13C109.5
N1—C5—C6108.96 (18)H13B—C13—H13C109.5
N1—C5—C4109.88 (18)C4—C14—H14A109.5
C6—C5—C4111.90 (18)C4—C14—H14B109.5
N1—C5—H5108.7H14A—C14—H14B109.5
C6—C5—H5108.7C4—C14—H14C109.5
C4—C5—H5108.7H14A—C14—H14C109.5
C7—C6—C5130.0 (2)H14B—C14—H14C109.5
C7—C6—S2109.81 (19)C1—N1—C5113.88 (17)
C5—C6—S2120.19 (17)C1—N1—H1A123.1
C6—C7—N2114.6 (2)C5—N1—H1A123.1
C6—C7—C13126.8 (3)C8—N2—C7111.0 (2)
N2—C7—C13118.5 (2)C9—N3—C10110.3 (2)
N2—C8—S2115.3 (2)C9—S1—C1188.64 (14)
N2—C8—H8122.4C8—S2—C689.28 (14)
N1—C1—C2—C354.1 (2)N3—C10—C11—S1−0.1 (3)
C11—C1—C2—C3175.84 (19)C12—C10—C11—S1177.6 (2)
C1—C2—C3—O1127.6 (3)N1—C1—C11—C10−147.0 (2)
C1—C2—C3—C4−51.0 (3)C2—C1—C11—C1092.3 (3)
O1—C3—C4—C14−2.3 (3)N1—C1—C11—S134.6 (3)
C2—C3—C4—C14176.4 (2)C2—C1—C11—S1−86.1 (2)
O1—C3—C4—C5−129.2 (2)C11—C1—N1—C5174.46 (18)
C2—C3—C4—C549.5 (3)C2—C1—N1—C5−62.4 (2)
C14—C4—C5—N1−178.6 (2)C6—C5—N1—C1−174.67 (18)
C3—C4—C5—N1−52.2 (2)C4—C5—N1—C162.4 (2)
C14—C4—C5—C660.2 (3)S2—C8—N2—C70.0 (3)
C3—C4—C5—C6−173.35 (19)C6—C7—N2—C80.6 (3)
N1—C5—C6—C7131.6 (3)C13—C7—N2—C8−178.5 (3)
C4—C5—C6—C7−106.6 (3)S1—C9—N3—C10−0.7 (3)
N1—C5—C6—S2−48.5 (2)C11—C10—N3—C90.5 (3)
C4—C5—C6—S273.2 (2)C12—C10—N3—C9−177.4 (3)
C5—C6—C7—N2178.9 (2)N3—C9—S1—C110.6 (2)
S2—C6—C7—N2−0.9 (3)C10—C11—S1—C9−0.28 (19)
C5—C6—C7—C13−2.1 (4)C1—C11—S1—C9178.4 (2)
S2—C6—C7—C13178.0 (2)N2—C8—S2—C6−0.5 (3)
N3—C10—C11—C1−178.6 (2)C7—C6—S2—C80.8 (2)
C12—C10—C11—C1−0.9 (4)C5—C6—S2—C8−179.1 (2)
D—H···AD—HH···AD···AD—H···A
C9—H9···N2i0.932.493.365 (4)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C9—H9⋯N2i 0.932.493.365 (4)157

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  The preparation of some piperidine derivatives by the Mannich reaction.

Authors:  C R NOLLER; V BALIAH
Journal:  J Am Chem Soc       Date:  1948-11       Impact factor: 15.419

3.  Compounds affecting the central nervous system. I. 4-Piperidones and related compounds.

Authors:  C R Ganellin; R G Spickett
Journal:  J Med Chem       Date:  1965-09       Impact factor: 7.446

4.  r-2,c-6-Bis(4-fluoro-phen-yl)-t-3,t-5-dimethyl-piperidin-4-one.

Authors:  D Gayathri; D Velmurugan; G Aridoss; S Kabilan; K Ravikumar
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-01-11

5.  2,6-Bis(3-methoxy-phen-yl)-3-methyl-piperidin-4-one.

Authors:  P Nithya; F Nawaz Khan; Motakatla Novanna; Venkatesha R Hathwar; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-04

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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