Literature DB >> 25309191

Crystal structure of 7-bromo-2-(3-fluoro-phen-yl)-1-(methyl-sulfin-yl)naphtho[2,1-b]furan.

Hong Dae Choi1, Uk Lee2.   

Abstract

In the title compound, C19H11BrFO2S, the dihedral angle between the plane of the naphtho-furan ring system [r.m.s. deviation = 0.043 (2) Å] and that of the 3-fluoro-benzene ring is 39.32 (8)°. In the crystal, mol-ecules are linked by C-H⋯O and C-Br⋯π [3.835 (1) Å] inter-actions into stacks along the c axis, forming a three-dimensional network. The F atom is disordered over two positions, with site-occupancy factors of 0.851 (3) and 0.149 (3).

Entities:  

Keywords:  3-fluoro­benzene; C—Br⋯π inter­actions; C—H⋯O inter­actions; crystal structure; naphtho­furan

Year:  2014        PMID: 25309191      PMCID: PMC4186200          DOI: 10.1107/S160053681401808X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological activities of compounds containing a naphtho­furan ring, see: Debnath et al. (1993 ▶); Einhorn et al. (1984 ▶); Hranjec et al. (2003 ▶); Mahadevan & Vaidya (2003 ▶). For the fluorescence properties of compounds having a naphtho­furan skeleton, see: Piloto et al. (2005 ▶). For the synthesis of the starting material 7-bromo-2-(3-fluoro­phen­yl)-1-(methyl­sulf­an­yl)naphtho­[2,1-b]furan, see: Choi et al. (1999 ▶). For a related structure, see: Choi et al. (2013 ▶).

Experimental

Crystal data

C19H12BrFO2S M = 403.26 Monoclinic, a = 6.1340 (1) Å b = 23.0602 (5) Å c = 10.8806 (2) Å β = 91.166 (1)° V = 1538.76 (5) Å3 Z = 4 Mo Kα radiation μ = 2.83 mm−1 T = 173 K 0.74 × 0.45 × 0.38 mm

Data collection

Bruker SMART APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.229, T max = 0.413 14935 measured reflections 3834 independent reflections 3033 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.098 S = 1.04 3834 reflections 228 parameters 14 restraints H-atom parameters constrained Δρmax = 0.47 e Å−3 Δρmin = −0.91 e Å−3

Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg, 1998 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I. DOI: 10.1107/S160053681401808X/tk5335sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681401808X/tk5335Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S160053681401808X/tk5335Isup3.cml Click here for additional data file. . DOI: 10.1107/S160053681401808X/tk5335fig1.tif The mol­ecular structure of the title compound with the atom numbering scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are presented as small spheres of arbitrary radius. The F atom of the 3-fluoro­benzene ring is disordered over two positions with site occupancy factors, from refinement of 0.851 (3) (part A) and 0.149 (3) (part B). Click here for additional data file. x y z x y z x y z . DOI: 10.1107/S160053681401808X/tk5335fig2.tif A view of the C—H⋯O and C—Br⋯π inter­actions (dotted lines) in the crystal structure of the title compound. H atoms non-participating in hydrogen-bonding are omitted for clarity [Symmetry codes: (i) x, − y + , z + ; (ii) x − 1, y, z; (iii) x, − y + , z − ]. CCDC reference: 1018271 Additional supporting information: crystallographic information; 3D view; checkCIF report
C19H12BrFO2SF(000) = 808
Mr = 403.26Dx = 1.741 Mg m3
Monoclinic, P21/cMelting point = 484 K–483 K K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 6.1340 (1) ÅCell parameters from 5530 reflections
b = 23.0602 (5) Åθ = 2.6–28.3°
c = 10.8806 (2) ŵ = 2.83 mm1
β = 91.166 (1)°T = 173 K
V = 1538.76 (5) Å3Block, colourless
Z = 40.74 × 0.45 × 0.38 mm
Bruker SMART APEXII CCD diffractometer3834 independent reflections
Radiation source: rotating anode3033 reflections with I > 2σ(I)
Graphite multilayer monochromatorRint = 0.047
Detector resolution: 10.0 pixels mm-1θmax = 28.4°, θmin = 1.8°
φ and ω scansh = −8→8
Absorption correction: multi-scan (SADABS; Bruker, 2009)k = −30→19
Tmin = 0.229, Tmax = 0.413l = −14→11
14935 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: difference Fourier map
wR(F2) = 0.098H-atom parameters constrained
S = 1.04w = 1/[σ2(Fo2) + (0.0539P)2 + 0.2694P] where P = (Fo2 + 2Fc2)/3
3834 reflections(Δ/σ)max = 0.001
228 parametersΔρmax = 0.47 e Å3
14 restraintsΔρmin = −0.91 e Å3
Experimental. 1H NMR (δ p.p.m., CDCl3, 400 Hz): 8.08-8.13 (m, 1H), 7.67-7.87 (m, 5H), 7.48-7.55 (m, 2H), 7.19-7.24 (m, 1H), 3.07 (s, 3H).
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Br1−0.54910 (4)0.387149 (11)−0.05723 (2)0.03031 (11)
S10.42612 (9)0.27925 (2)0.34599 (5)0.01784 (14)
O10.5270 (3)0.44696 (6)0.37648 (14)0.0183 (3)
O20.3848 (3)0.25673 (7)0.21917 (14)0.0241 (4)
C10.4108 (4)0.35599 (9)0.34160 (19)0.0149 (4)
C20.2686 (4)0.39476 (9)0.2724 (2)0.0146 (5)
C30.0780 (4)0.38989 (9)0.1956 (2)0.0153 (5)
C4−0.0172 (4)0.33718 (9)0.1568 (2)0.0184 (5)
H40.04790.30160.18210.022*
C5−0.2012 (4)0.33605 (10)0.0835 (2)0.0213 (5)
H5−0.26270.30020.05740.026*
C6−0.2975 (4)0.38870 (9)0.0474 (2)0.0204 (5)
C7−0.2122 (4)0.44064 (10)0.0813 (2)0.0202 (5)
H7−0.28040.47560.05480.024*
C8−0.0216 (4)0.44276 (9)0.1562 (2)0.0173 (5)
C90.0723 (4)0.49734 (10)0.1878 (2)0.0208 (5)
H90.00300.53180.15950.025*
C100.2587 (4)0.50152 (10)0.2573 (2)0.0206 (5)
H100.32330.53790.27670.025*
C110.3494 (4)0.44945 (9)0.2984 (2)0.0169 (5)
C120.5593 (4)0.38974 (9)0.4033 (2)0.0166 (5)
C130.7303 (4)0.37854 (9)0.4959 (2)0.0170 (5)
C140.9160 (4)0.41338 (10)0.4996 (2)0.0187 (5)
H140.93540.44340.44100.022*
C15A1.0699 (4)0.40315 (11)0.5903 (2)0.0253 (6)0.851 (3)
F1A1.2485 (3)0.43617 (7)0.59705 (16)0.0334 (5)0.851 (3)
C15B1.0699 (4)0.40315 (11)0.5903 (2)0.0253 (6)0.15
H15B1.19710.42670.59270.030*0.149 (3)
C161.0499 (4)0.36077 (11)0.6776 (2)0.0278 (6)
H161.16070.35440.73840.033*
C17A0.8625 (4)0.32773 (11)0.6738 (2)0.0273 (6)0.851 (3)
H17A0.84330.29840.73400.033*0.851 (3)
C17B0.8625 (4)0.32773 (11)0.6738 (2)0.0273 (6)0.15
F1B0.8601 (17)0.2943 (4)0.7701 (6)0.034 (3)0.149 (3)
C180.7026 (4)0.33614 (10)0.5852 (2)0.0204 (5)
H180.57410.31310.58500.025*
C190.1839 (4)0.26492 (10)0.4306 (2)0.0236 (5)
H19A0.06150.28660.39410.035*
H19B0.20650.27700.51630.035*
H19C0.15140.22330.42760.035*
U11U22U33U12U13U23
Br10.02564 (16)0.03656 (18)0.02825 (17)−0.00225 (11)−0.01109 (11)0.00308 (11)
S10.0209 (3)0.0138 (3)0.0187 (3)0.0028 (2)−0.0025 (2)−0.0023 (2)
O10.0201 (8)0.0164 (8)0.0184 (8)−0.0024 (6)−0.0026 (7)−0.0005 (6)
O20.0306 (10)0.0204 (8)0.0213 (9)0.0033 (7)−0.0002 (7)−0.0066 (7)
C10.0173 (11)0.0149 (10)0.0127 (11)0.0003 (9)0.0011 (8)−0.0005 (8)
C20.0183 (12)0.0142 (10)0.0114 (11)−0.0001 (8)0.0016 (9)−0.0015 (8)
C30.0174 (11)0.0181 (11)0.0105 (10)0.0019 (8)0.0015 (9)−0.0012 (8)
C40.0219 (12)0.0151 (11)0.0183 (11)−0.0002 (9)−0.0008 (9)0.0002 (9)
C50.0219 (13)0.0218 (12)0.0202 (12)−0.0023 (10)−0.0017 (9)−0.0018 (10)
C60.0180 (12)0.0287 (13)0.0144 (11)0.0000 (10)−0.0023 (9)−0.0002 (9)
C70.0220 (12)0.0228 (12)0.0156 (11)0.0043 (10)−0.0017 (9)0.0031 (9)
C80.0211 (12)0.0186 (11)0.0123 (11)0.0025 (9)0.0003 (8)0.0006 (9)
C90.0307 (14)0.0140 (11)0.0175 (11)0.0038 (9)−0.0011 (10)0.0011 (9)
C100.0290 (13)0.0138 (11)0.0191 (12)−0.0013 (9)0.0025 (10)−0.0003 (9)
C110.0171 (11)0.0195 (11)0.0141 (11)−0.0009 (9)0.0004 (9)0.0009 (9)
C120.0189 (12)0.0157 (11)0.0151 (11)0.0012 (9)0.0025 (9)0.0014 (8)
C130.0172 (12)0.0191 (11)0.0149 (11)0.0017 (9)0.0002 (9)−0.0045 (9)
C140.0202 (12)0.0184 (11)0.0175 (12)0.0003 (9)0.0015 (9)−0.0047 (9)
C15A0.0181 (13)0.0272 (13)0.0304 (14)−0.0002 (10)−0.0025 (10)−0.0156 (11)
F1A0.0217 (10)0.0360 (10)0.0424 (11)−0.0107 (8)−0.0036 (8)−0.0071 (8)
C15B0.0181 (13)0.0272 (13)0.0304 (14)−0.0002 (10)−0.0025 (10)−0.0156 (11)
C160.0300 (15)0.0291 (14)0.0240 (13)0.0119 (11)−0.0108 (11)−0.0091 (11)
C17A0.0320 (15)0.0277 (13)0.0219 (13)0.0057 (11)−0.0043 (11)−0.0012 (11)
C17B0.0320 (15)0.0277 (13)0.0219 (13)0.0057 (11)−0.0043 (11)−0.0012 (11)
F1B0.040 (6)0.037 (5)0.024 (5)−0.005 (4)−0.017 (4)0.000 (4)
C180.0218 (13)0.0219 (12)0.0176 (12)−0.0013 (10)−0.0001 (9)−0.0003 (9)
C190.0306 (14)0.0180 (11)0.0222 (13)−0.0029 (10)0.0011 (10)0.0005 (10)
Br1—C61.899 (2)C9—C101.361 (3)
S1—O21.4912 (16)C9—H90.9500
S1—C11.773 (2)C10—C111.393 (3)
S1—C191.795 (2)C10—H100.9500
O1—C121.365 (2)C12—C131.463 (3)
O1—C111.369 (3)C13—C181.391 (3)
C1—C121.364 (3)C13—C141.393 (3)
C1—C21.449 (3)C14—C15A1.373 (3)
C2—C111.382 (3)C14—H140.9500
C2—C31.428 (3)C15A—F1A1.335 (3)
C3—C41.409 (3)C15A—C161.370 (4)
C3—C81.426 (3)C16—C17A1.379 (4)
C4—C51.369 (3)C16—H160.9500
C4—H40.9500C17A—C181.375 (3)
C5—C61.403 (3)C17A—H17A0.9500
C5—H50.9500C18—H180.9500
C6—C71.355 (3)C19—H19A0.9800
C7—C81.412 (3)C19—H19B0.9800
C7—H70.9500C19—H19C0.9800
C8—C91.424 (3)
O2—S1—C1108.36 (10)C9—C10—H10121.9
O2—S1—C19106.48 (11)C11—C10—H10121.9
C1—S1—C1998.85 (11)O1—C11—C2111.47 (19)
C12—O1—C11106.47 (17)O1—C11—C10122.9 (2)
C12—C1—C2107.00 (18)C2—C11—C10125.6 (2)
C12—C1—S1121.46 (17)C1—C12—O1110.71 (19)
C2—C1—S1131.36 (16)C1—C12—C13134.5 (2)
C11—C2—C3118.51 (19)O1—C12—C13114.64 (18)
C11—C2—C1104.32 (19)C18—C13—C14119.8 (2)
C3—C2—C1137.10 (19)C18—C13—C12120.6 (2)
C4—C3—C8118.3 (2)C14—C13—C12119.5 (2)
C4—C3—C2124.92 (19)C15A—C14—C13118.1 (2)
C8—C3—C2116.73 (19)C15A—C14—H14120.9
C5—C4—C3121.5 (2)C13—C14—H14120.9
C5—C4—H4119.3F1A—C15A—C16117.0 (2)
C3—C4—H4119.3F1A—C15A—C14119.6 (2)
C4—C5—C6119.0 (2)C16—C15A—C14123.4 (2)
C4—C5—H5120.5C15A—C16—C17A117.4 (2)
C6—C5—H5120.5C15A—C16—H16121.3
C7—C6—C5122.0 (2)C17A—C16—H16121.3
C7—C6—Br1118.98 (17)C18—C17A—C16121.7 (2)
C5—C6—Br1118.93 (17)C18—C17A—H17A119.2
C6—C7—C8119.9 (2)C16—C17A—H17A119.2
C6—C7—H7120.1C17A—C18—C13119.6 (2)
C8—C7—H7120.1C17A—C18—H18120.2
C7—C8—C9119.8 (2)C13—C18—H18120.2
C7—C8—C3119.3 (2)S1—C19—H19A109.5
C9—C8—C3121.0 (2)S1—C19—H19B109.5
C10—C9—C8121.9 (2)H19A—C19—H19B109.5
C10—C9—H9119.1S1—C19—H19C109.5
C8—C9—H9119.1H19A—C19—H19C109.5
C9—C10—C11116.3 (2)H19B—C19—H19C109.5
O2—S1—C1—C12−136.65 (19)C12—O1—C11—C2−1.1 (3)
C19—S1—C1—C12112.6 (2)C12—O1—C11—C10175.8 (2)
O2—S1—C1—C237.8 (2)C3—C2—C11—O1177.72 (19)
C19—S1—C1—C2−73.0 (2)C1—C2—C11—O10.1 (2)
C12—C1—C2—C110.9 (2)C3—C2—C11—C101.0 (4)
S1—C1—C2—C11−174.17 (18)C1—C2—C11—C10−176.6 (2)
C12—C1—C2—C3−176.0 (3)C9—C10—C11—O1−175.0 (2)
S1—C1—C2—C39.0 (4)C9—C10—C11—C21.4 (4)
C11—C2—C3—C4177.0 (2)C2—C1—C12—O1−1.6 (3)
C1—C2—C3—C4−6.4 (4)S1—C1—C12—O1174.03 (15)
C11—C2—C3—C8−3.0 (3)C2—C1—C12—C13173.1 (2)
C1—C2—C3—C8173.5 (2)S1—C1—C12—C13−11.2 (4)
C8—C3—C4—C5−0.3 (3)C11—O1—C12—C11.7 (3)
C2—C3—C4—C5179.7 (2)C11—O1—C12—C13−174.20 (19)
C3—C4—C5—C6−0.6 (4)C1—C12—C13—C18−34.8 (4)
C4—C5—C6—C71.0 (4)O1—C12—C13—C18139.7 (2)
C4—C5—C6—Br1178.65 (18)C1—C12—C13—C14149.5 (3)
C5—C6—C7—C8−0.6 (4)O1—C12—C13—C14−35.9 (3)
Br1—C6—C7—C8−178.20 (17)C18—C13—C14—C15A2.0 (3)
C6—C7—C8—C9177.6 (2)C12—C13—C14—C15A177.7 (2)
C6—C7—C8—C3−0.3 (4)C13—C14—C15A—F1A−179.3 (2)
C4—C3—C8—C70.7 (3)C13—C14—C15A—C16−0.4 (4)
C2—C3—C8—C7−179.2 (2)F1A—C15A—C16—C17A177.9 (2)
C4—C3—C8—C9−177.1 (2)C14—C15A—C16—C17A−1.1 (4)
C2—C3—C8—C92.9 (3)C15A—C16—C17A—C180.9 (4)
C7—C8—C9—C10−178.4 (2)C16—C17A—C18—C130.7 (4)
C3—C8—C9—C10−0.6 (4)C14—C13—C18—C17A−2.2 (3)
C8—C9—C10—C11−1.6 (3)C12—C13—C18—C17A−177.8 (2)
D—H···AD—HH···AD···AD—H···A
C18—H18···O2i0.952.483.260 (3)139
C19—H19B···O2i0.982.563.387 (3)142
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C18—H18⋯O2i 0.952.483.260 (3)139
C19—H19B⋯O2i 0.982.563.387 (3)142

Symmetry code: (i) .

  4 in total

1.  Synthesis and antitumor evaluation of some new substituted amidino-benzimidazolyl-furyl-phenyl-acrylates and naphtho[2,1-b]furan-carboxylates.

Authors:  M Hranjec; M Grdisa; K Pavelic; D W Boykin; G Karminski-Zamola
Journal:  Farmaco       Date:  2003-12

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Mechanistic interpretation of the genotoxicity of nitrofurans (antibacterial agents) using quantitative structure-activity relationships and comparative molecular field analysis.

Authors:  A K Debnath; C Hansch; K H Kim; Y C Martin
Journal:  J Med Chem       Date:  1993-04-16       Impact factor: 7.446

4.  7-Bromo-2-(4-methyl-phen-yl)-1-(methyl-sulfin-yl)naphtho-[2,1-b]furan.

Authors:  Hong Dae Choi; Pil Ja Seo; Uk Lee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-22
  4 in total

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