Literature DB >> 25309185

Crystal structure of {2-[({2-[(2-amino-eth-yl)amino]-eth-yl}imino)-meth-yl]pheno-lato}aqua-copper(II) bromide.

Nataliya I Plyuta1, Julia A Rusanova1, Svitlana R Petrusenko1, Irina V Omelchenko2.   

Abstract

In the mononuclear copper(II) title complex, [Cu(C11H16N3O)(H2O)]Br, the Cu(II) atom is coordinated by one O and three N atoms of the Schiff base ligand that forms together with one water mol-ecule a slightly distorted [CuN3O2] square-pyramidal polyhedron. The deviation of the Cu(II) atom from the mean equatorial plane is 0.182 (2) Å. The equatorial plane is nearly coplanar to the aromatic ring of the ligand [angle between planes = 10.4 (1)°], and the water molecule is situated in the apical site. All coordinating atoms (except the imine nitro-gen) and the bromide ion contribute to the formation of the N-H⋯Br, O-H⋯Br and O-H⋯O hydrogen bonds, which link mol-ecules into chains along [01-1].

Entities:  

Keywords:  Schiff base ligand; bromide; copper(II) complex; crystal structure; hydrogen bonding

Year:  2014        PMID: 25309185      PMCID: PMC4186199          DOI: 10.1107/S1600536814017590

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures isotypic with that of the title compound, see: Zhu et al. (2002 ▶, 2004 ▶); He (2003 ▶). For the direct synthesis of copper-containing coordination compounds using the salt route, see: Kovbasyuk et al. (1997 ▶); Pryma et al. (2003 ▶); Buvaylo et al. (2005 ▶); Nikitina et al. (2008 ▶); Vassilyeva et al. (1997 ▶); Makhankova et al. (2002 ▶). For the direct synthesis of polynuclear copper-containing complexes, see: Nesterova (Pryma) et al. (2004 ▶); Nesterova et al. (2005 ▶).

Experimental

Crystal data

[Cu(C11H16N3O)(H2O)]Br M = 367.73 Monoclinic, a = 9.2226 (11) Å b = 14.0333 (13) Å c = 10.9206 (11) Å β = 102.355 (11)° V = 1380.7 (3) Å3 Z = 4 Mo Kα radiation μ = 4.47 mm−1 T = 293 K 0.40 × 0.40 × 0.40 mm

Data collection

Agilent Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.268, T max = 0.268 7804 measured reflections 4004 independent reflections 2334 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.097 S = 0.95 4004 reflections 163 parameters H-atom parameters constrained Δρmax = 0.98 e Å−3 Δρmin = −0.38 e Å−3

Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED (Agilent, 2011 ▶); program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: OLEX2 (Dolomanov et al., 2009 ▶); molecular graphics: SHELXTL; software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536814017590/rn2126sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814017590/rn2126Isup2.hkl Click here for additional data file. . DOI: 10.1107/S1600536814017590/rn2126fig1.tif Structure of the title compound, with displacement ellipsoids drawn at the 50% probability level for non-H atoms with hydrogen bonds shown as dashed lines. Click here for additional data file. . DOI: 10.1107/S1600536814017590/rn2126fig2.tif Crystal packing of the title compound with hydrogen bonds shown as dashed lines. CCDC reference: 1017209 Additional supporting information: crystallographic information; 3D view; checkCIF report
[Cu(C11H16N3O)(H2O)]BrF(000) = 740
Mr = 367.73Dx = 1.769 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1502 reflections
a = 9.2226 (11) Åθ = 2.9–32.2°
b = 14.0333 (13) ŵ = 4.47 mm1
c = 10.9206 (11) ÅT = 293 K
β = 102.355 (11)°Block, green
V = 1380.7 (3) Å30.40 × 0.40 × 0.40 mm
Z = 4
Agilent Xcalibur Sapphire3 diffractometer4004 independent reflections
Radiation source: Enhance (Mo) X-ray Source2334 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.045
Detector resolution: 16.1827 pixels mm-1θmax = 30.0°, θmin = 2.9°
ω scansh = −7→12
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −16→19
Tmin = 0.268, Tmax = 0.268l = −15→12
7804 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.097H-atom parameters constrained
S = 0.95w = 1/[σ2(Fo2) + (0.0308P)2] where P = (Fo2 + 2Fc2)/3
4004 reflections(Δ/σ)max = 0.001
163 parametersΔρmax = 0.98 e Å3
0 restraintsΔρmin = −0.38 e Å3
Experimental. Absorption correction: CrysAlis PRO (Agilent, 2011) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.67287 (6)0.58118 (3)0.65849 (4)0.03317 (14)
Br10.70894 (6)0.32849 (3)0.91251 (4)0.04828 (15)
O10.6489 (3)0.61004 (19)0.4836 (2)0.0412 (7)
O20.6414 (3)0.41770 (17)0.6240 (2)0.0401 (7)
H2OA0.55480.40320.59490.060*
H2OB0.66140.39120.69200.060*
N10.8883 (4)0.5872 (2)0.6891 (3)0.0346 (8)
N20.7031 (4)0.5675 (2)0.8462 (3)0.0387 (8)
H2N0.70590.50790.86040.046*
N30.4595 (4)0.6068 (2)0.6646 (3)0.0399 (8)
H3NA0.43580.66320.64110.048*
H3NB0.40870.56790.61320.048*
C10.9071 (4)0.6273 (2)0.4771 (3)0.0302 (8)
C20.7532 (5)0.6287 (2)0.4219 (3)0.0313 (9)
C30.7118 (5)0.6529 (2)0.2942 (3)0.0349 (9)
H30.61170.65420.25560.042*
C40.8153 (5)0.6747 (3)0.2252 (4)0.0424 (11)
H40.78370.69120.14120.051*
C50.9668 (5)0.6727 (3)0.2784 (4)0.0463 (11)
H51.03680.68640.23090.056*
C61.0092 (5)0.6498 (3)0.4026 (4)0.0419 (10)
H61.11000.64910.43940.050*
C70.9648 (5)0.6070 (2)0.6085 (4)0.0366 (9)
H71.06730.60850.63640.044*
C80.9587 (5)0.5675 (3)0.8202 (4)0.0467 (11)
H8A1.05280.60070.84290.056*
H8B0.97710.49970.83200.056*
C90.8548 (5)0.6011 (3)0.9012 (4)0.0411 (10)
H9A0.88680.57620.98550.049*
H9B0.85610.67020.90580.049*
C100.5790 (5)0.6137 (3)0.8863 (4)0.0440 (11)
H10A0.59350.68220.88990.053*
H10B0.57280.59150.96910.053*
C110.4385 (5)0.5896 (3)0.7935 (4)0.0492 (11)
H11A0.41320.52330.80270.059*
H11B0.35760.62870.80920.059*
U11U22U33U12U13U23
Cu10.0316 (3)0.0396 (3)0.0258 (2)0.0004 (2)0.00050 (19)0.0017 (2)
Br10.0532 (3)0.0425 (2)0.0456 (3)−0.0024 (2)0.0028 (2)0.0084 (2)
O10.0259 (16)0.0651 (18)0.0285 (14)−0.0052 (14)−0.0029 (12)0.0099 (13)
O20.0341 (17)0.0430 (15)0.0378 (15)−0.0046 (13)−0.0039 (12)−0.0007 (13)
N10.032 (2)0.0361 (17)0.0306 (17)0.0052 (15)−0.0046 (14)−0.0041 (15)
N20.053 (2)0.0278 (16)0.0327 (18)−0.0054 (16)0.0025 (16)0.0013 (14)
N30.037 (2)0.0425 (18)0.0396 (19)−0.0004 (16)0.0076 (16)−0.0011 (15)
C10.027 (2)0.0261 (17)0.036 (2)0.0005 (17)0.0039 (17)−0.0055 (16)
C20.033 (2)0.0300 (19)0.031 (2)−0.0043 (18)0.0052 (17)−0.0009 (16)
C30.035 (2)0.037 (2)0.029 (2)−0.0076 (18)0.0001 (17)−0.0034 (16)
C40.058 (3)0.036 (2)0.035 (2)−0.004 (2)0.014 (2)−0.0020 (18)
C50.047 (3)0.047 (2)0.052 (3)0.002 (2)0.026 (2)−0.012 (2)
C60.032 (3)0.040 (2)0.055 (3)−0.0030 (19)0.012 (2)−0.010 (2)
C70.024 (2)0.036 (2)0.046 (2)0.0033 (17)−0.0014 (19)−0.0055 (18)
C80.047 (3)0.052 (3)0.032 (2)0.014 (2)−0.0111 (19)0.0004 (19)
C90.047 (3)0.043 (2)0.028 (2)0.003 (2)−0.0043 (19)0.0004 (18)
C100.054 (3)0.045 (2)0.036 (2)−0.002 (2)0.015 (2)−0.0047 (18)
C110.048 (3)0.059 (3)0.043 (3)−0.008 (2)0.016 (2)−0.005 (2)
Cu1—O11.919 (3)C2—C31.407 (5)
Cu1—N11.945 (3)C3—C41.371 (5)
Cu1—N32.016 (3)C3—H30.9300
Cu1—N22.018 (3)C4—C51.395 (6)
Cu1—O22.333 (2)C4—H40.9300
O1—C21.313 (4)C5—C61.367 (6)
O2—H2OA0.8197C5—H50.9300
O2—H2OB0.8159C6—H60.9300
N1—C71.271 (5)C7—H70.9300
N1—C81.466 (5)C8—C91.512 (6)
N2—C101.461 (5)C8—H8A0.9700
N2—C91.477 (5)C8—H8B0.9700
N2—H2N0.8495C9—H9A0.9700
N3—C111.481 (5)C9—H9B0.9700
N3—H3NA0.8455C10—C111.503 (6)
N3—H3NB0.8494C10—H10A0.9700
C1—C61.407 (5)C10—H10B0.9700
C1—C21.418 (5)C11—H11A0.9700
C1—C71.447 (5)C11—H11B0.9700
O1—Cu1—N193.31 (12)C2—C3—H3119.1
O1—Cu1—N395.17 (12)C3—C4—C5121.3 (4)
N1—Cu1—N3162.80 (13)C3—C4—H4119.3
O1—Cu1—N2173.18 (12)C5—C4—H4119.3
N1—Cu1—N285.17 (14)C6—C5—C4117.8 (4)
N3—Cu1—N284.65 (14)C6—C5—H5121.1
O1—Cu1—O293.61 (10)C4—C5—H5121.1
N1—Cu1—O299.09 (11)C5—C6—C1122.8 (4)
N3—Cu1—O295.29 (11)C5—C6—H6118.6
N2—Cu1—O293.20 (10)C1—C6—H6118.6
C2—O1—Cu1127.7 (2)N1—C7—C1126.1 (4)
Cu1—O2—H2OA112.6N1—C7—H7117.0
Cu1—O2—H2OB107.8C1—C7—H7117.0
H2OA—O2—H2OB104.6N1—C8—C9108.0 (3)
C7—N1—C8121.5 (4)N1—C8—H8A110.1
C7—N1—Cu1126.0 (3)C9—C8—H8A110.1
C8—N1—Cu1112.5 (3)N1—C8—H8B110.1
C10—N2—C9118.1 (3)C9—C8—H8B110.1
C10—N2—Cu1108.4 (2)H8A—C8—H8B108.4
C9—N2—Cu1107.2 (2)N2—C9—C8109.0 (3)
C10—N2—H2N112.2N2—C9—H9A109.9
C9—N2—H2N104.5C8—C9—H9A109.9
Cu1—N2—H2N105.7N2—C9—H9B109.9
C11—N3—Cu1109.3 (3)C8—C9—H9B109.9
C11—N3—H3NA111.3H9A—C9—H9B108.3
Cu1—N3—H3NA110.3N2—C10—C11108.4 (3)
C11—N3—H3NB111.0N2—C10—H10A110.0
Cu1—N3—H3NB105.5C11—C10—H10A110.0
H3NA—N3—H3NB109.3N2—C10—H10B110.0
C6—C1—C2119.0 (4)C11—C10—H10B110.0
C6—C1—C7117.9 (4)H10A—C10—H10B108.4
C2—C1—C7123.1 (4)N3—C11—C10109.5 (4)
O1—C2—C3118.9 (4)N3—C11—H11A109.8
O1—C2—C1123.7 (3)C10—C11—H11A109.8
C3—C2—C1117.3 (4)N3—C11—H11B109.8
C4—C3—C2121.7 (4)C10—C11—H11B109.8
C4—C3—H3119.1H11A—C11—H11B108.2
D—H···AD—HH···AD···AD—H···A
O2—H2OB···Br10.822.513.323 (3)173
N2—H2N···Br10.852.583.429 (3)177
O2—H2OA···O1i0.821.902.712 (4)171
N3—H3NA···Br1ii0.852.683.499 (3)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2OB⋯Br10.822.513.323 (3)173
N2—H2N⋯Br10.852.583.429 (3)177
O2—H2OA⋯O1i 0.821.902.712 (4)171
N3—H3NA⋯Br1ii 0.852.683.499 (3)164

Symmetry codes: (i) ; (ii) .

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